Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2784 and Rru_A2785 are separated by 41 nucleotides Rru_A2785 and Rru_A2786 overlap by 11 nucleotides
Rru_A2784: Rru_A2784 - Basic membrane lipoprotein (NCBI), at 3,217,605 to 3,218,594
_A2784
Rru_A2785: Rru_A2785 - ABC transporter component (NCBI), at 3,218,636 to 3,220,171
_A2785
Rru_A2786: Rru_A2786 - inner-membrane translocator (NCBI), at 3,220,161 to 3,221,210
_A2786
Position (kb)
3218
3219
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3217.707 kb on + strand, within Rru_A2784 at 3217.707 kb on + strand, within Rru_A2784 at 3217.707 kb on + strand, within Rru_A2784 at 3217.708 kb on - strand, within Rru_A2784 at 3217.708 kb on - strand, within Rru_A2784 at 3217.709 kb on + strand, within Rru_A2784 at 3217.710 kb on - strand, within Rru_A2784 at 3217.789 kb on - strand, within Rru_A2784 at 3217.789 kb on - strand, within Rru_A2784 at 3217.842 kb on + strand, within Rru_A2784 at 3217.843 kb on - strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.992 kb on + strand, within Rru_A2784 at 3217.993 kb on - strand, within Rru_A2784 at 3217.993 kb on - strand, within Rru_A2784 at 3217.993 kb on - strand, within Rru_A2784 at 3217.993 kb on - strand, within Rru_A2784 at 3217.993 kb on - strand, within Rru_A2784 at 3218.010 kb on + strand, within Rru_A2784 at 3218.010 kb on + strand, within Rru_A2784 at 3218.010 kb on + strand, within Rru_A2784 at 3218.010 kb on + strand, within Rru_A2784 at 3218.011 kb on - strand, within Rru_A2784 at 3218.011 kb on - strand, within Rru_A2784 at 3218.011 kb on - strand, within Rru_A2784 at 3218.238 kb on + strand, within Rru_A2784 at 3218.421 kb on + strand, within Rru_A2784 at 3218.422 kb on - strand, within Rru_A2784 at 3218.422 kb on - strand, within Rru_A2784 at 3218.430 kb on + strand, within Rru_A2784 at 3218.436 kb on + strand, within Rru_A2784 at 3218.436 kb on + strand, within Rru_A2784 at 3218.436 kb on + strand, within Rru_A2784 at 3218.437 kb on - strand, within Rru_A2784 at 3218.437 kb on - strand, within Rru_A2784 at 3218.437 kb on - strand, within Rru_A2784 at 3218.592 kb on + strand at 3218.592 kb on + strand at 3218.592 kb on + strand at 3218.593 kb on - strand at 3218.593 kb on - strand at 3218.788 kb on + strand at 3218.789 kb on - strand at 3218.804 kb on + strand, within Rru_A2785 at 3218.804 kb on + strand, within Rru_A2785 at 3218.804 kb on + strand, within Rru_A2785 at 3218.805 kb on - strand, within Rru_A2785 at 3219.238 kb on + strand, within Rru_A2785 at 3219.238 kb on + strand, within Rru_A2785 at 3219.238 kb on + strand, within Rru_A2785 at 3219.244 kb on - strand, within Rru_A2785 at 3219.810 kb on + strand, within Rru_A2785 at 3219.810 kb on + strand, within Rru_A2785 at 3219.810 kb on + strand, within Rru_A2785 at 3219.810 kb on + strand, within Rru_A2785 at 3219.810 kb on + strand, within Rru_A2785 at 3219.811 kb on - strand, within Rru_A2785 at 3219.811 kb on - strand, within Rru_A2785 at 3219.811 kb on - strand, within Rru_A2785 at 3219.811 kb on - strand, within Rru_A2785 at 3219.811 kb on - strand, within Rru_A2785 at 3219.859 kb on + strand, within Rru_A2785 at 3219.859 kb on + strand, within Rru_A2785 at 3219.860 kb on - strand, within Rru_A2785 at 3220.437 kb on + strand, within Rru_A2786 at 3220.437 kb on + strand, within Rru_A2786 at 3220.438 kb on - strand, within Rru_A2786 at 3220.438 kb on - strand, within Rru_A2786 at 3220.438 kb on - strand, within Rru_A2786 at 3220.438 kb on - strand, within Rru_A2786 at 3220.966 kb on - strand, within Rru_A2786 at 3220.966 kb on - strand, within Rru_A2786 at 3220.999 kb on - strand, within Rru_A2786 at 3221.124 kb on + strand at 3221.124 kb on + strand at 3221.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 3,217,707 + Rru_A2784 0.10 -1.0 3,217,707 + Rru_A2784 0.10 -0.0 3,217,707 + Rru_A2784 0.10 -0.0 3,217,708 - Rru_A2784 0.10 -0.0 3,217,708 - Rru_A2784 0.10 -0.0 3,217,709 + Rru_A2784 0.11 +2.0 3,217,710 - Rru_A2784 0.11 -0.0 3,217,789 - Rru_A2784 0.19 -0.0 3,217,789 - Rru_A2784 0.19 -0.0 3,217,842 + Rru_A2784 0.24 -0.0 3,217,843 - Rru_A2784 0.24 -0.0 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -0.8 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -1.3 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -1.1 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -1.3 3,217,992 + Rru_A2784 0.39 -0.0 3,217,992 + Rru_A2784 0.39 -1.2 3,217,992 + Rru_A2784 0.39 -0.0 3,217,993 - Rru_A2784 0.39 -0.0 3,217,993 - Rru_A2784 0.39 -1.0 3,217,993 - Rru_A2784 0.39 -1.1 3,217,993 - Rru_A2784 0.39 -2.0 3,217,993 - Rru_A2784 0.39 -0.9 3,218,010 + Rru_A2784 0.41 -0.0 3,218,010 + Rru_A2784 0.41 -0.0 3,218,010 + Rru_A2784 0.41 -0.0 3,218,010 + Rru_A2784 0.41 -0.0 3,218,011 - Rru_A2784 0.41 -0.0 3,218,011 - Rru_A2784 0.41 -0.0 3,218,011 - Rru_A2784 0.41 -0.0 3,218,238 + Rru_A2784 0.64 -0.9 3,218,421 + Rru_A2784 0.82 -0.9 3,218,422 - Rru_A2784 0.83 -1.1 3,218,422 - Rru_A2784 0.83 -0.0 3,218,430 + Rru_A2784 0.83 -0.0 3,218,436 + Rru_A2784 0.84 -0.0 3,218,436 + Rru_A2784 0.84 -0.0 3,218,436 + Rru_A2784 0.84 -0.4 3,218,437 - Rru_A2784 0.84 -0.0 3,218,437 - Rru_A2784 0.84 -0.0 3,218,437 - Rru_A2784 0.84 -0.0 3,218,592 + -0.0 3,218,592 + -1.5 3,218,592 + -0.0 3,218,593 - -1.3 3,218,593 - -0.6 3,218,788 + -0.0 3,218,789 - -0.6 3,218,804 + Rru_A2785 0.11 -0.4 3,218,804 + Rru_A2785 0.11 -0.0 3,218,804 + Rru_A2785 0.11 -0.7 3,218,805 - Rru_A2785 0.11 -0.0 3,219,238 + Rru_A2785 0.39 -0.0 3,219,238 + Rru_A2785 0.39 -0.0 3,219,238 + Rru_A2785 0.39 -1.0 3,219,244 - Rru_A2785 0.40 -0.0 3,219,810 + Rru_A2785 0.76 -0.0 3,219,810 + Rru_A2785 0.76 -0.0 3,219,810 + Rru_A2785 0.76 +0.0 3,219,810 + Rru_A2785 0.76 -0.0 3,219,810 + Rru_A2785 0.76 -0.0 3,219,811 - Rru_A2785 0.76 -1.1 3,219,811 - Rru_A2785 0.76 -1.4 3,219,811 - Rru_A2785 0.76 -0.0 3,219,811 - Rru_A2785 0.76 -0.0 3,219,811 - Rru_A2785 0.76 -1.0 3,219,859 + Rru_A2785 0.80 -0.0 3,219,859 + Rru_A2785 0.80 -0.0 3,219,860 - Rru_A2785 0.80 -0.0 3,220,437 + Rru_A2786 0.26 -0.0 3,220,437 + Rru_A2786 0.26 -0.0 3,220,438 - Rru_A2786 0.26 -0.0 3,220,438 - Rru_A2786 0.26 -0.0 3,220,438 - Rru_A2786 0.26 -0.0 3,220,438 - Rru_A2786 0.26 -0.0 3,220,966 - Rru_A2786 0.77 -0.0 3,220,966 - Rru_A2786 0.77 -0.0 3,220,999 - Rru_A2786 0.80 -0.0 3,221,124 + -0.0 3,221,124 + -0.0 3,221,125 - -0.0
Or see this region's nucleotide sequence