Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2551

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2550 and Rru_A2551 overlap by 4 nucleotidesRru_A2551 and Rru_A2552 are separated by 93 nucleotidesRru_A2552 and Rru_A2553 overlap by 4 nucleotides Rru_A2550: Rru_A2550 - L-carnitine dehydratase/bile acid-inducible protein F (NCBI), at 2,965,790 to 2,967,016 _A2550 Rru_A2551: Rru_A2551 - Protein of unknown function DUF218 (NCBI), at 2,967,013 to 2,967,633 _A2551 Rru_A2552: Rru_A2552 - hypothetical protein (NCBI), at 2,967,727 to 2,968,581 _A2552 Rru_A2553: Rru_A2553 - Methylase involved in ubiquinone/menaquinone biosynthesis-like (NCBI), at 2,968,578 to 2,969,267 _A2553 Position (kb) 2967 2968Strain fitness (log2 ratio) -1 0 1at 2966.014 kb on + strand, within Rru_A2550at 2966.015 kb on - strand, within Rru_A2550at 2966.330 kb on - strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.331 kb on + strand, within Rru_A2550at 2966.332 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.338 kb on - strand, within Rru_A2550at 2966.379 kb on + strand, within Rru_A2550at 2966.380 kb on - strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.470 kb on + strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.471 kb on - strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.472 kb on + strand, within Rru_A2550at 2966.473 kb on - strand, within Rru_A2550at 2966.473 kb on - strand, within Rru_A2550at 2967.231 kb on + strand, within Rru_A2551at 2967.231 kb on + strand, within Rru_A2551at 2967.232 kb on - strand, within Rru_A2551at 2967.232 kb on - strand, within Rru_A2551at 2967.232 kb on - strand, within Rru_A2551at 2967.232 kb on - strand, within Rru_A2551at 2967.232 kb on - strand, within Rru_A2551at 2967.294 kb on + strand, within Rru_A2551at 2967.294 kb on + strand, within Rru_A2551at 2967.295 kb on - strand, within Rru_A2551at 2967.536 kb on - strand, within Rru_A2551at 2967.610 kb on + strandat 2967.610 kb on + strandat 2967.611 kb on - strandat 2967.611 kb on - strandat 2967.615 kb on + strandat 2967.615 kb on + strandat 2967.616 kb on - strandat 2967.636 kb on + strandat 2967.637 kb on - strandat 2967.637 kb on - strandat 2967.653 kb on + strandat 2967.653 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.662 kb on + strandat 2967.663 kb on - strandat 2967.663 kb on - strandat 2967.663 kb on - strandat 2967.666 kb on - strandat 2967.713 kb on + strandat 2967.738 kb on - strandat 2968.197 kb on + strand, within Rru_A2552at 2968.197 kb on + strand, within Rru_A2552at 2968.198 kb on - strand, within Rru_A2552at 2968.198 kb on - strand, within Rru_A2552at 2968.198 kb on - strand, within Rru_A2552at 2968.550 kb on - strandat 2968.598 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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2,966,014 + Rru_A2550 0.18 -1.5
2,966,015 - Rru_A2550 0.18 -0.5
2,966,330 - Rru_A2550 0.44 -0.0
2,966,331 + Rru_A2550 0.44 -0.0
2,966,331 + Rru_A2550 0.44 -1.4
2,966,331 + Rru_A2550 0.44 -0.0
2,966,331 + Rru_A2550 0.44 -1.2
2,966,332 - Rru_A2550 0.44 -0.0
2,966,338 - Rru_A2550 0.45 -1.1
2,966,338 - Rru_A2550 0.45 -0.0
2,966,338 - Rru_A2550 0.45 -0.0
2,966,379 + Rru_A2550 0.48 -0.0
2,966,380 - Rru_A2550 0.48 -0.0
2,966,470 + Rru_A2550 0.55 -0.0
2,966,470 + Rru_A2550 0.55 -1.1
2,966,470 + Rru_A2550 0.55 -0.0
2,966,470 + Rru_A2550 0.55 -0.0
2,966,470 + Rru_A2550 0.55 -0.0
2,966,471 - Rru_A2550 0.56 -0.0
2,966,471 - Rru_A2550 0.56 -0.0
2,966,471 - Rru_A2550 0.56 -0.0
2,966,471 - Rru_A2550 0.56 -0.0
2,966,471 - Rru_A2550 0.56 -1.0
2,966,471 - Rru_A2550 0.56 -0.0
2,966,472 + Rru_A2550 0.56 -0.0
2,966,472 + Rru_A2550 0.56 -0.0
2,966,472 + Rru_A2550 0.56 -0.0
2,966,472 + Rru_A2550 0.56 -1.6
2,966,472 + Rru_A2550 0.56 -0.0
2,966,473 - Rru_A2550 0.56 -0.0
2,966,473 - Rru_A2550 0.56 -0.7
2,967,231 + Rru_A2551 0.35 -0.0
2,967,231 + Rru_A2551 0.35 -0.0
2,967,232 - Rru_A2551 0.35 -1.0
2,967,232 - Rru_A2551 0.35 -0.0
2,967,232 - Rru_A2551 0.35 -0.7
2,967,232 - Rru_A2551 0.35 -0.0
2,967,232 - Rru_A2551 0.35 -0.0
2,967,294 + Rru_A2551 0.45 -0.0
2,967,294 + Rru_A2551 0.45 -1.2
2,967,295 - Rru_A2551 0.45 -0.0
2,967,536 - Rru_A2551 0.84 -0.0
2,967,610 + -0.0
2,967,610 + -1.6
2,967,611 - -0.9
2,967,611 - -0.0
2,967,615 + -1.3
2,967,615 + -0.0
2,967,616 - -0.0
2,967,636 + -0.0
2,967,637 - -1.4
2,967,637 - -0.0
2,967,653 + -0.0
2,967,653 + -1.2
2,967,662 + -0.0
2,967,662 + -1.6
2,967,662 + -0.0
2,967,662 + -0.0
2,967,662 + -0.0
2,967,662 + -0.0
2,967,662 + -0.0
2,967,663 - -0.0
2,967,663 - -1.4
2,967,663 - -0.0
2,967,666 - -0.0
2,967,713 + -0.0
2,967,738 - -0.0
2,968,197 + Rru_A2552 0.55 -1.6
2,968,197 + Rru_A2552 0.55 -0.0
2,968,198 - Rru_A2552 0.55 -0.0
2,968,198 - Rru_A2552 0.55 -0.0
2,968,198 - Rru_A2552 0.55 -1.7
2,968,550 - -0.0
2,968,598 + -1.5

Or see this region's nucleotide sequence