Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1933 and Rru_A1934 are separated by 625 nucleotides Rru_A1934 and Rru_A1935 are separated by 87 nucleotides
Rru_A1933: Rru_A1933 - Uroporphyrin-III C-methyltransferase (NCBI), at 2,238,831 to 2,240,330
_A1933
Rru_A1934: Rru_A1934 - Transcriptional Regulator, TetR family (NCBI), at 2,240,956 to 2,241,564
_A1934
Rru_A1935: Rru_A1935 - Transcriptional Regulator, LuxR family (NCBI), at 2,241,652 to 2,242,416
_A1935
Position (kb)
2240
2241
2242 Strain fitness (log2 ratio)
-1
0
1 at 2240.857 kb on - strand at 2240.909 kb on - strand at 2240.914 kb on - strand at 2241.059 kb on - strand, within Rru_A1934 at 2241.118 kb on + strand, within Rru_A1934 at 2241.118 kb on + strand, within Rru_A1934 at 2241.119 kb on - strand, within Rru_A1934 at 2241.119 kb on - strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.121 kb on + strand, within Rru_A1934 at 2241.122 kb on - strand, within Rru_A1934 at 2241.122 kb on - strand, within Rru_A1934 at 2241.122 kb on - strand, within Rru_A1934 at 2241.122 kb on - strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.124 kb on + strand, within Rru_A1934 at 2241.125 kb on - strand, within Rru_A1934 at 2241.125 kb on - strand, within Rru_A1934 at 2241.256 kb on + strand, within Rru_A1934 at 2241.257 kb on - strand, within Rru_A1934 at 2241.257 kb on - strand, within Rru_A1934 at 2241.257 kb on - strand, within Rru_A1934 at 2241.257 kb on - strand, within Rru_A1934 at 2241.484 kb on + strand, within Rru_A1934 at 2241.484 kb on + strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.485 kb on - strand, within Rru_A1934 at 2241.526 kb on + strand at 2241.526 kb on + strand at 2241.670 kb on + strand at 2241.670 kb on + strand at 2241.670 kb on + strand at 2241.671 kb on - strand at 2241.671 kb on - strand at 2241.792 kb on + strand, within Rru_A1935 at 2241.793 kb on - strand, within Rru_A1935 at 2241.793 kb on - strand, within Rru_A1935 at 2241.793 kb on - strand, within Rru_A1935 at 2241.793 kb on - strand, within Rru_A1935 at 2241.793 kb on - strand, within Rru_A1935 at 2241.993 kb on + strand, within Rru_A1935 at 2241.994 kb on - strand, within Rru_A1935 at 2241.994 kb on - strand, within Rru_A1935 at 2241.994 kb on - strand, within Rru_A1935 at 2241.994 kb on - strand, within Rru_A1935 at 2241.995 kb on + strand, within Rru_A1935 at 2241.996 kb on - strand, within Rru_A1935 at 2242.264 kb on - strand, within Rru_A1935 at 2242.264 kb on - strand, within Rru_A1935 at 2242.264 kb on - strand, within Rru_A1935 at 2242.264 kb on - strand, within Rru_A1935 at 2242.283 kb on + strand, within Rru_A1935 at 2242.283 kb on + strand, within Rru_A1935 at 2242.283 kb on + strand, within Rru_A1935 at 2242.284 kb on - strand, within Rru_A1935 at 2242.284 kb on - strand, within Rru_A1935 at 2242.284 kb on - strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.317 kb on + strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.318 kb on - strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.319 kb on + strand, within Rru_A1935 at 2242.320 kb on - strand, within Rru_A1935 at 2242.320 kb on - strand, within Rru_A1935 at 2242.320 kb on - strand, within Rru_A1935 at 2242.320 kb on - strand, within Rru_A1935 at 2242.320 kb on - strand, within Rru_A1935 at 2242.373 kb on + strand at 2242.374 kb on - strand at 2242.374 kb on - strand at 2242.374 kb on - strand at 2242.556 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 2,240,857 - -0.9 2,240,909 - -1.0 2,240,914 - -0.0 2,241,059 - Rru_A1934 0.17 -0.0 2,241,118 + Rru_A1934 0.27 -0.0 2,241,118 + Rru_A1934 0.27 -0.0 2,241,119 - Rru_A1934 0.27 -0.0 2,241,119 - Rru_A1934 0.27 -1.0 2,241,121 + Rru_A1934 0.27 -0.0 2,241,121 + Rru_A1934 0.27 -1.0 2,241,121 + Rru_A1934 0.27 -0.0 2,241,121 + Rru_A1934 0.27 -1.1 2,241,121 + Rru_A1934 0.27 -0.0 2,241,121 + Rru_A1934 0.27 -0.0 2,241,121 + Rru_A1934 0.27 -0.0 2,241,121 + Rru_A1934 0.27 -1.4 2,241,121 + Rru_A1934 0.27 -1.0 2,241,121 + Rru_A1934 0.27 -1.2 2,241,122 - Rru_A1934 0.27 -0.0 2,241,122 - Rru_A1934 0.27 -1.0 2,241,122 - Rru_A1934 0.27 -1.0 2,241,122 - Rru_A1934 0.27 -1.6 2,241,124 + Rru_A1934 0.28 -1.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -1.2 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,124 + Rru_A1934 0.28 -0.0 2,241,125 - Rru_A1934 0.28 -0.0 2,241,125 - Rru_A1934 0.28 -0.0 2,241,256 + Rru_A1934 0.49 -0.0 2,241,257 - Rru_A1934 0.49 -1.6 2,241,257 - Rru_A1934 0.49 -0.0 2,241,257 - Rru_A1934 0.49 -1.5 2,241,257 - Rru_A1934 0.49 -0.0 2,241,484 + Rru_A1934 0.87 -1.0 2,241,484 + Rru_A1934 0.87 -1.4 2,241,485 - Rru_A1934 0.87 -1.2 2,241,485 - Rru_A1934 0.87 -1.6 2,241,485 - Rru_A1934 0.87 -0.0 2,241,485 - Rru_A1934 0.87 -0.0 2,241,485 - Rru_A1934 0.87 -0.0 2,241,485 - Rru_A1934 0.87 -1.0 2,241,526 + -0.9 2,241,526 + -0.0 2,241,670 + -0.0 2,241,670 + -0.0 2,241,670 + -1.6 2,241,671 - -0.0 2,241,671 - -1.0 2,241,792 + Rru_A1935 0.18 -0.0 2,241,793 - Rru_A1935 0.18 -1.4 2,241,793 - Rru_A1935 0.18 -0.0 2,241,793 - Rru_A1935 0.18 -0.0 2,241,793 - Rru_A1935 0.18 -1.0 2,241,793 - Rru_A1935 0.18 -1.0 2,241,993 + Rru_A1935 0.45 -0.5 2,241,994 - Rru_A1935 0.45 -1.2 2,241,994 - Rru_A1935 0.45 -0.0 2,241,994 - Rru_A1935 0.45 -0.0 2,241,994 - Rru_A1935 0.45 -0.0 2,241,995 + Rru_A1935 0.45 -0.0 2,241,996 - Rru_A1935 0.45 -0.0 2,242,264 - Rru_A1935 0.80 -0.0 2,242,264 - Rru_A1935 0.80 -0.0 2,242,264 - Rru_A1935 0.80 -1.0 2,242,264 - Rru_A1935 0.80 -0.9 2,242,283 + Rru_A1935 0.82 -0.0 2,242,283 + Rru_A1935 0.82 -0.0 2,242,283 + Rru_A1935 0.82 -0.0 2,242,284 - Rru_A1935 0.83 -0.0 2,242,284 - Rru_A1935 0.83 -0.0 2,242,284 - Rru_A1935 0.83 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,317 + Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -1.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,318 - Rru_A1935 0.87 -1.0 2,242,318 - Rru_A1935 0.87 -0.0 2,242,319 + Rru_A1935 0.87 -0.0 2,242,319 + Rru_A1935 0.87 -0.6 2,242,319 + Rru_A1935 0.87 -1.7 2,242,319 + Rru_A1935 0.87 -0.0 2,242,319 + Rru_A1935 0.87 -0.0 2,242,319 + Rru_A1935 0.87 -1.2 2,242,319 + Rru_A1935 0.87 -0.0 2,242,320 - Rru_A1935 0.87 -0.0 2,242,320 - Rru_A1935 0.87 -0.0 2,242,320 - Rru_A1935 0.87 -0.0 2,242,320 - Rru_A1935 0.87 -0.0 2,242,320 - Rru_A1935 0.87 -1.4 2,242,373 + -1.0 2,242,374 - -0.0 2,242,374 - -0.0 2,242,374 - -0.7 2,242,556 + -0.8
Or see this region's nucleotide sequence