Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1496

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1495 and Rru_A1496 overlap by 4 nucleotidesRru_A1496 and Rru_A1497 overlap by 4 nucleotides Rru_A1495: Rru_A1495 - hypothetical protein (NCBI), at 1,765,765 to 1,767,090 _A1495 Rru_A1496: Rru_A1496 - Glycosyl transferase, group 1 (NCBI), at 1,767,087 to 1,768,106 _A1496 Rru_A1497: Rru_A1497 - Cyclic peptide transporter (NCBI), at 1,768,103 to 1,769,776 _A1497 Position (kb) 1767 1768 1769Strain fitness (log2 ratio) -2 -1 0 1at 1766.113 kb on + strand, within Rru_A1495at 1766.113 kb on + strand, within Rru_A1495at 1766.114 kb on - strand, within Rru_A1495at 1766.114 kb on - strand, within Rru_A1495at 1766.114 kb on - strand, within Rru_A1495at 1766.114 kb on - strand, within Rru_A1495at 1766.115 kb on + strand, within Rru_A1495at 1766.115 kb on + strand, within Rru_A1495at 1766.115 kb on + strand, within Rru_A1495at 1766.116 kb on - strand, within Rru_A1495at 1766.116 kb on - strand, within Rru_A1495at 1766.116 kb on - strand, within Rru_A1495at 1766.116 kb on - strand, within Rru_A1495at 1766.123 kb on + strand, within Rru_A1495at 1766.123 kb on + strand, within Rru_A1495at 1766.124 kb on - strand, within Rru_A1495at 1766.124 kb on - strand, within Rru_A1495at 1766.215 kb on + strand, within Rru_A1495at 1766.220 kb on + strand, within Rru_A1495at 1766.220 kb on + strand, within Rru_A1495at 1766.220 kb on + strand, within Rru_A1495at 1766.281 kb on + strand, within Rru_A1495at 1766.458 kb on + strand, within Rru_A1495at 1766.459 kb on - strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.611 kb on + strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.612 kb on - strand, within Rru_A1495at 1766.617 kb on + strand, within Rru_A1495at 1766.619 kb on + strand, within Rru_A1495at 1766.619 kb on + strand, within Rru_A1495at 1766.620 kb on - strand, within Rru_A1495at 1766.620 kb on - strand, within Rru_A1495at 1766.674 kb on - strand, within Rru_A1495at 1766.691 kb on + strand, within Rru_A1495at 1766.692 kb on - strand, within Rru_A1495at 1766.798 kb on - strand, within Rru_A1495at 1766.839 kb on + strand, within Rru_A1495at 1766.839 kb on + strand, within Rru_A1495at 1767.115 kb on - strandat 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.327 kb on + strand, within Rru_A1496at 1767.328 kb on - strand, within Rru_A1496at 1767.328 kb on - strand, within Rru_A1496at 1767.329 kb on + strand, within Rru_A1496at 1767.330 kb on - strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.342 kb on + strand, within Rru_A1496at 1767.343 kb on - strand, within Rru_A1496at 1767.343 kb on - strand, within Rru_A1496at 1767.343 kb on - strand, within Rru_A1496at 1767.346 kb on - strand, within Rru_A1496at 1767.346 kb on - strand, within Rru_A1496at 1767.506 kb on - strand, within Rru_A1496at 1768.068 kb on + strandat 1768.069 kb on - strandat 1768.297 kb on + strand, within Rru_A1497at 1768.298 kb on - strand, within Rru_A1497at 1768.298 kb on - strand, within Rru_A1497at 1768.580 kb on + strand, within Rru_A1497at 1768.977 kb on + strand, within Rru_A1497at 1768.977 kb on + strand, within Rru_A1497at 1768.978 kb on - strand, within Rru_A1497at 1768.978 kb on - strand, within Rru_A1497at 1768.978 kb on - strand, within Rru_A1497

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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1,766,113 + Rru_A1495 0.26 -0.0
1,766,113 + Rru_A1495 0.26 -0.7
1,766,114 - Rru_A1495 0.26 -0.0
1,766,114 - Rru_A1495 0.26 -0.0
1,766,114 - Rru_A1495 0.26 -0.0
1,766,114 - Rru_A1495 0.26 -0.0
1,766,115 + Rru_A1495 0.26 -0.0
1,766,115 + Rru_A1495 0.26 -0.0
1,766,115 + Rru_A1495 0.26 -0.0
1,766,116 - Rru_A1495 0.26 -0.1
1,766,116 - Rru_A1495 0.26 -0.0
1,766,116 - Rru_A1495 0.26 -0.0
1,766,116 - Rru_A1495 0.26 -0.4
1,766,123 + Rru_A1495 0.27 +0.3
1,766,123 + Rru_A1495 0.27 -2.0
1,766,124 - Rru_A1495 0.27 -0.0
1,766,124 - Rru_A1495 0.27 -0.0
1,766,215 + Rru_A1495 0.34 -0.0
1,766,220 + Rru_A1495 0.34 -0.0
1,766,220 + Rru_A1495 0.34 -0.0
1,766,220 + Rru_A1495 0.34 -1.0
1,766,281 + Rru_A1495 0.39 -0.0
1,766,458 + Rru_A1495 0.52 -0.0
1,766,459 - Rru_A1495 0.52 -0.7
1,766,611 + Rru_A1495 0.64 -1.6
1,766,611 + Rru_A1495 0.64 -1.0
1,766,611 + Rru_A1495 0.64 -1.6
1,766,611 + Rru_A1495 0.64 -0.7
1,766,611 + Rru_A1495 0.64 -1.0
1,766,611 + Rru_A1495 0.64 -0.0
1,766,612 - Rru_A1495 0.64 -0.0
1,766,612 - Rru_A1495 0.64 -0.5
1,766,612 - Rru_A1495 0.64 -0.0
1,766,612 - Rru_A1495 0.64 -0.8
1,766,612 - Rru_A1495 0.64 -0.0
1,766,612 - Rru_A1495 0.64 -0.0
1,766,612 - Rru_A1495 0.64 -0.0
1,766,617 + Rru_A1495 0.64 -0.0
1,766,619 + Rru_A1495 0.64 -0.0
1,766,619 + Rru_A1495 0.64 -0.0
1,766,620 - Rru_A1495 0.64 -0.0
1,766,620 - Rru_A1495 0.64 -0.2
1,766,674 - Rru_A1495 0.69 -1.0
1,766,691 + Rru_A1495 0.70 -0.0
1,766,692 - Rru_A1495 0.70 -0.0
1,766,798 - Rru_A1495 0.78 -0.0
1,766,839 + Rru_A1495 0.81 -0.0
1,766,839 + Rru_A1495 0.81 -1.2
1,767,115 - -1.1
1,767,327 + Rru_A1496 0.24 -0.0
1,767,327 + Rru_A1496 0.24 -0.0
1,767,327 + Rru_A1496 0.24 -0.0
1,767,327 + Rru_A1496 0.24 -0.4
1,767,327 + Rru_A1496 0.24 -1.0
1,767,327 + Rru_A1496 0.24 -0.6
1,767,327 + Rru_A1496 0.24 -0.0
1,767,328 - Rru_A1496 0.24 -0.0
1,767,328 - Rru_A1496 0.24 -0.7
1,767,329 + Rru_A1496 0.24 -0.0
1,767,330 - Rru_A1496 0.24 -0.0
1,767,342 + Rru_A1496 0.25 -0.0
1,767,342 + Rru_A1496 0.25 -0.0
1,767,342 + Rru_A1496 0.25 -0.0
1,767,342 + Rru_A1496 0.25 -0.0
1,767,342 + Rru_A1496 0.25 -0.0
1,767,342 + Rru_A1496 0.25 -1.0
1,767,343 - Rru_A1496 0.25 +0.1
1,767,343 - Rru_A1496 0.25 -0.6
1,767,343 - Rru_A1496 0.25 -0.0
1,767,346 - Rru_A1496 0.25 -0.0
1,767,346 - Rru_A1496 0.25 -0.0
1,767,506 - Rru_A1496 0.41 -0.7
1,768,068 + -0.2
1,768,069 - -0.0
1,768,297 + Rru_A1497 0.12 -0.0
1,768,298 - Rru_A1497 0.12 -1.5
1,768,298 - Rru_A1497 0.12 -0.0
1,768,580 + Rru_A1497 0.28 -0.0
1,768,977 + Rru_A1497 0.52 -0.0
1,768,977 + Rru_A1497 0.52 -0.7
1,768,978 - Rru_A1497 0.52 -0.0
1,768,978 - Rru_A1497 0.52 -0.4
1,768,978 - Rru_A1497 0.52 -0.0

Or see this region's nucleotide sequence