Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A1168 and Rru_A1169 overlap by 1 nucleotides Rru_A1169 and Rru_A1170 are separated by 43 nucleotides Rru_A1170 and Rru_A1171 are separated by 621 nucleotides
Rru_A1168: Rru_A1168 - Hydrogenase expression/synthesis, HypA (NCBI), at 1,385,068 to 1,385,409
_A1168
Rru_A1169: Rru_A1169 - Hydrogenase accessory protein HypB (NCBI), at 1,385,409 to 1,386,215
_A1169
Rru_A1170: Rru_A1170 - Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI), at 1,386,259 to 1,387,704
_A1170
Rru_A1171: Rru_A1171 - Transcriptional Regulator, BadM/Rrf2 family (NCBI), at 1,388,326 to 1,388,772
_A1171
Position (kb) 1386
1387
1388 Strain fitness (log2 ratio) -2
-1
0
1 at 1385.350 kb on + strand, within Rru_A1168 at 1385.350 kb on + strand, within Rru_A1168 at 1385.351 kb on - strand, within Rru_A1168 at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.414 kb on + strand at 1385.415 kb on - strand at 1385.604 kb on - strand, within Rru_A1169 at 1385.681 kb on - strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.855 kb on + strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.946 kb on - strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1385.994 kb on + strand, within Rru_A1169 at 1386.055 kb on - strand, within Rru_A1169 at 1386.087 kb on + strand, within Rru_A1169 at 1386.088 kb on - strand, within Rru_A1169 at 1386.162 kb on + strand at 1386.213 kb on + strand at 1386.214 kb on - strand at 1386.214 kb on - strand at 1386.214 kb on - strand at 1386.276 kb on + strand at 1386.277 kb on - strand at 1386.284 kb on + strand at 1386.285 kb on - strand at 1386.622 kb on + strand, within Rru_A1170 at 1386.622 kb on + strand, within Rru_A1170 at 1386.810 kb on + strand, within Rru_A1170 at 1386.810 kb on + strand, within Rru_A1170 at 1386.811 kb on - strand, within Rru_A1170 at 1386.976 kb on + strand, within Rru_A1170 at 1386.976 kb on + strand, within Rru_A1170 at 1386.977 kb on - strand, within Rru_A1170 at 1386.977 kb on - strand, within Rru_A1170 at 1386.977 kb on - strand, within Rru_A1170 at 1387.744 kb on + strand at 1387.745 kb on - strand at 1387.812 kb on + strand at 1387.812 kb on + strand at 1387.813 kb on - strand at 1387.857 kb on + strand at 1387.884 kb on - strand at 1387.884 kb on - strand at 1388.288 kb on + strand at 1388.331 kb on - strand at 1388.331 kb on - strand at 1388.369 kb on - strand at 1388.369 kb on - strand at 1388.515 kb on + strand, within Rru_A1171 at 1388.516 kb on - strand, within Rru_A1171
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 1,385,350 + Rru_A1168 0.82 -0.0 1,385,350 + Rru_A1168 0.82 -0.0 1,385,351 - Rru_A1168 0.83 -0.0 1,385,414 + -0.0 1,385,414 + -0.0 1,385,414 + -0.0 1,385,415 - -1.0 1,385,604 - Rru_A1169 0.24 -0.0 1,385,681 - Rru_A1169 0.34 -1.0 1,385,855 + Rru_A1169 0.55 -0.0 1,385,855 + Rru_A1169 0.55 -0.4 1,385,946 - Rru_A1169 0.67 -0.0 1,385,946 - Rru_A1169 0.67 +0.4 1,385,946 - Rru_A1169 0.67 -1.0 1,385,994 + Rru_A1169 0.72 -1.9 1,385,994 + Rru_A1169 0.72 -0.0 1,386,055 - Rru_A1169 0.80 -0.8 1,386,087 + Rru_A1169 0.84 -0.0 1,386,088 - Rru_A1169 0.84 -0.0 1,386,162 + -0.0 1,386,213 + -0.0 1,386,214 - -0.0 1,386,214 - -0.0 1,386,214 - -1.3 1,386,276 + -1.1 1,386,277 - -0.0 1,386,284 + -0.0 1,386,285 - -0.5 1,386,622 + Rru_A1170 0.25 -1.0 1,386,622 + Rru_A1170 0.25 -0.0 1,386,810 + Rru_A1170 0.38 -0.0 1,386,810 + Rru_A1170 0.38 +0.2 1,386,811 - Rru_A1170 0.38 -0.0 1,386,976 + Rru_A1170 0.50 -0.0 1,386,976 + Rru_A1170 0.50 -0.0 1,386,977 - Rru_A1170 0.50 -0.0 1,386,977 - Rru_A1170 0.50 -0.0 1,386,977 - Rru_A1170 0.50 -0.0 1,387,744 + -1.0 1,387,745 - -0.0 1,387,812 + -1.8 1,387,812 + -0.0 1,387,813 - -1.0 1,387,857 + -0.0 1,387,884 - -0.0 1,387,884 - -0.0 1,388,288 + -0.0 1,388,331 - -0.0 1,388,331 - -0.0 1,388,369 - -0.0 1,388,369 - -0.0 1,388,515 + Rru_A1171 0.42 -0.0 1,388,516 - Rru_A1171 0.43 -0.0
Or see this region's nucleotide sequence