Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0851 and Rru_A0852 are separated by 330 nucleotides Rru_A0852 and Rru_A0853 overlap by 2 nucleotides Rru_A0853 and Rru_A0854 are separated by 99 nucleotides
Rru_A0851: Rru_A0851 - HPr kinase (NCBI), at 1,014,237 to 1,015,280
_A0851
Rru_A0852: Rru_A0852 - hypothetical protein (NCBI), at 1,015,611 to 1,015,898
_A0852
Rru_A0853: Rru_A0853 - hypothetical protein (NCBI), at 1,015,897 to 1,016,982
_A0853
Rru_A0854: Rru_A0854 - Sulfotransferase (NCBI), at 1,017,082 to 1,017,981
_A0854
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -1
0
1 at 1015.181 kb on + strand at 1015.182 kb on - strand at 1015.496 kb on - strand at 1015.702 kb on + strand, within Rru_A0852 at 1015.702 kb on + strand, within Rru_A0852 at 1015.702 kb on + strand, within Rru_A0852 at 1015.767 kb on - strand, within Rru_A0852 at 1015.786 kb on - strand, within Rru_A0852 at 1015.786 kb on - strand, within Rru_A0852 at 1015.915 kb on + strand at 1015.916 kb on - strand at 1015.916 kb on - strand at 1015.917 kb on + strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.918 kb on - strand at 1015.966 kb on + strand at 1015.966 kb on + strand at 1015.967 kb on - strand at 1015.967 kb on - strand at 1015.967 kb on - strand at 1015.999 kb on - strand at 1016.013 kb on + strand, within Rru_A0853 at 1016.014 kb on - strand, within Rru_A0853 at 1016.014 kb on - strand, within Rru_A0853 at 1016.068 kb on + strand, within Rru_A0853 at 1016.344 kb on + strand, within Rru_A0853 at 1016.344 kb on + strand, within Rru_A0853 at 1016.345 kb on - strand, within Rru_A0853 at 1016.345 kb on - strand, within Rru_A0853 at 1016.361 kb on + strand, within Rru_A0853 at 1016.362 kb on - strand, within Rru_A0853 at 1016.362 kb on - strand, within Rru_A0853 at 1016.362 kb on - strand, within Rru_A0853 at 1016.362 kb on - strand, within Rru_A0853 at 1016.808 kb on + strand, within Rru_A0853 at 1016.809 kb on - strand, within Rru_A0853 at 1016.809 kb on - strand, within Rru_A0853 at 1016.894 kb on + strand at 1016.895 kb on - strand at 1016.895 kb on - strand at 1017.062 kb on + strand at 1017.063 kb on - strand at 1017.239 kb on + strand, within Rru_A0854 at 1017.239 kb on + strand, within Rru_A0854 at 1017.239 kb on + strand, within Rru_A0854 at 1017.239 kb on + strand, within Rru_A0854 at 1017.240 kb on - strand, within Rru_A0854 at 1017.240 kb on - strand, within Rru_A0854 at 1017.583 kb on + strand, within Rru_A0854
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 1,015,181 + +0.1 1,015,182 - +0.1 1,015,496 - +0.1 1,015,702 + Rru_A0852 0.32 -1.0 1,015,702 + Rru_A0852 0.32 -0.6 1,015,702 + Rru_A0852 0.32 -1.3 1,015,767 - Rru_A0852 0.54 +0.1 1,015,786 - Rru_A0852 0.61 +0.1 1,015,786 - Rru_A0852 0.61 -1.5 1,015,915 + +0.1 1,015,916 - +0.1 1,015,916 - -1.1 1,015,917 + +0.1 1,015,918 - +0.1 1,015,918 - -0.9 1,015,918 - +0.1 1,015,918 - -0.9 1,015,918 - +0.1 1,015,918 - +0.1 1,015,918 - +0.1 1,015,918 - +0.1 1,015,966 + +0.1 1,015,966 + +0.1 1,015,967 - +0.1 1,015,967 - +0.1 1,015,967 - +0.1 1,015,999 - +0.1 1,016,013 + Rru_A0853 0.11 +0.1 1,016,014 - Rru_A0853 0.11 +0.1 1,016,014 - Rru_A0853 0.11 -0.9 1,016,068 + Rru_A0853 0.16 +0.1 1,016,344 + Rru_A0853 0.41 +0.1 1,016,344 + Rru_A0853 0.41 +0.1 1,016,345 - Rru_A0853 0.41 +0.1 1,016,345 - Rru_A0853 0.41 +0.1 1,016,361 + Rru_A0853 0.43 +0.1 1,016,362 - Rru_A0853 0.43 +0.1 1,016,362 - Rru_A0853 0.43 +0.1 1,016,362 - Rru_A0853 0.43 +0.1 1,016,362 - Rru_A0853 0.43 -0.9 1,016,808 + Rru_A0853 0.84 -1.1 1,016,809 - Rru_A0853 0.84 +0.1 1,016,809 - Rru_A0853 0.84 -1.2 1,016,894 + -1.0 1,016,895 - -0.6 1,016,895 - +0.1 1,017,062 + -1.5 1,017,063 - -1.5 1,017,239 + Rru_A0854 0.17 +0.1 1,017,239 + Rru_A0854 0.17 +0.1 1,017,239 + Rru_A0854 0.17 +0.1 1,017,239 + Rru_A0854 0.17 +0.1 1,017,240 - Rru_A0854 0.18 -0.7 1,017,240 - Rru_A0854 0.18 -0.8 1,017,583 + Rru_A0854 0.56 +0.1
Or see this region's nucleotide sequence