Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0784

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0782 and Rru_A0783 are separated by 7 nucleotidesRru_A0783 and Rru_A0784 are separated by 198 nucleotidesRru_A0784 and Rru_A0785 are separated by 334 nucleotides Rru_A0782: Rru_A0782 - hypothetical protein (NCBI), at 934,549 to 934,887 _A0782 Rru_A0783: Rru_A0783 - hypothetical protein (NCBI), at 934,895 to 935,452 _A0783 Rru_A0784: Rru_A0784 - O-acetylhomoserine/O-acetylserine sulfhydrylase (NCBI), at 935,651 to 936,979 _A0784 Rru_A0785: Rru_A0785 - Transcriptional Regulator, LysR family (NCBI), at 937,314 to 938,249 _A0785 Position (kb) 935 936 937Strain fitness (log2 ratio) -2 -1 0 1at 934.718 kb on - strand, within Rru_A0782at 934.880 kb on - strandat 934.880 kb on - strandat 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.060 kb on + strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.061 kb on - strand, within Rru_A0783at 935.062 kb on + strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.063 kb on - strand, within Rru_A0783at 935.110 kb on - strand, within Rru_A0783at 935.151 kb on + strand, within Rru_A0783at 935.237 kb on + strand, within Rru_A0783at 935.238 kb on - strand, within Rru_A0783at 935.269 kb on + strand, within Rru_A0783at 935.450 kb on + strandat 935.524 kb on + strandat 935.524 kb on + strandat 935.545 kb on + strandat 935.604 kb on - strandat 935.677 kb on + strandat 935.778 kb on - strandat 935.792 kb on + strand, within Rru_A0784at 935.792 kb on + strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.793 kb on - strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.851 kb on + strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.852 kb on - strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.855 kb on + strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 935.856 kb on - strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.140 kb on + strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.141 kb on - strand, within Rru_A0784at 936.143 kb on + strand, within Rru_A0784at 936.238 kb on + strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.239 kb on - strand, within Rru_A0784at 936.297 kb on - strand, within Rru_A0784at 936.312 kb on - strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784at 936.422 kb on + strand, within Rru_A0784at 936.473 kb on + strand, within Rru_A0784at 936.473 kb on + strand, within Rru_A0784at 936.473 kb on + strand, within Rru_A0784at 936.473 kb on + strand, within Rru_A0784at 936.474 kb on - strand, within Rru_A0784at 936.474 kb on - strand, within Rru_A0784at 936.474 kb on - strand, within Rru_A0784at 936.474 kb on - strand, within Rru_A0784at 936.475 kb on + strand, within Rru_A0784at 936.475 kb on + strand, within Rru_A0784at 936.476 kb on - strand, within Rru_A0784at 936.654 kb on - strand, within Rru_A0784at 936.654 kb on - strand, within Rru_A0784at 936.698 kb on + strand, within Rru_A0784at 936.698 kb on + strand, within Rru_A0784at 936.699 kb on - strand, within Rru_A0784at 936.699 kb on - strand, within Rru_A0784at 936.791 kb on + strand, within Rru_A0784at 936.791 kb on + strand, within Rru_A0784at 936.792 kb on - strand, within Rru_A0784at 936.792 kb on - strand, within Rru_A0784at 936.902 kb on + strandat 936.902 kb on + strandat 936.902 kb on + strandat 936.902 kb on + strandat 936.903 kb on - strandat 936.903 kb on - strandat 936.903 kb on - strandat 937.210 kb on + strandat 937.211 kb on - strandat 937.212 kb on + strandat 937.212 kb on + strandat 937.331 kb on + strandat 937.331 kb on + strandat 937.331 kb on + strandat 937.332 kb on - strandat 937.433 kb on - strand, within Rru_A0785at 937.433 kb on - strand, within Rru_A0785at 937.481 kb on + strand, within Rru_A0785at 937.867 kb on + strand, within Rru_A0785at 937.868 kb on - strand, within Rru_A0785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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934,718 - Rru_A0782 0.50 -0.9
934,880 - +0.1
934,880 - +0.1
935,060 + Rru_A0783 0.30 +0.1
935,060 + Rru_A0783 0.30 +0.1
935,060 + Rru_A0783 0.30 +0.1
935,061 - Rru_A0783 0.30 +0.4
935,061 - Rru_A0783 0.30 +0.1
935,061 - Rru_A0783 0.30 -0.1
935,062 + Rru_A0783 0.30 -0.8
935,063 - Rru_A0783 0.30 +0.1
935,063 - Rru_A0783 0.30 +0.1
935,063 - Rru_A0783 0.30 +0.1
935,063 - Rru_A0783 0.30 -1.5
935,063 - Rru_A0783 0.30 +0.1
935,110 - Rru_A0783 0.39 +0.1
935,151 + Rru_A0783 0.46 -1.5
935,237 + Rru_A0783 0.61 -1.3
935,238 - Rru_A0783 0.61 -0.9
935,269 + Rru_A0783 0.67 +0.1
935,450 + +0.1
935,524 + -1.3
935,524 + +0.1
935,545 + -1.0
935,604 - +0.1
935,677 + -1.5
935,778 - +0.1
935,792 + Rru_A0784 0.11 +0.1
935,792 + Rru_A0784 0.11 -1.2
935,793 - Rru_A0784 0.11 +0.1
935,793 - Rru_A0784 0.11 +0.1
935,851 + Rru_A0784 0.15 +0.1
935,851 + Rru_A0784 0.15 +0.1
935,851 + Rru_A0784 0.15 -1.4
935,851 + Rru_A0784 0.15 +0.1
935,851 + Rru_A0784 0.15 +0.1
935,851 + Rru_A0784 0.15 +0.1
935,852 - Rru_A0784 0.15 -2.3
935,852 - Rru_A0784 0.15 +0.1
935,852 - Rru_A0784 0.15 +0.1
935,855 + Rru_A0784 0.15 +0.1
935,855 + Rru_A0784 0.15 +0.1
935,855 + Rru_A0784 0.15 +0.1
935,855 + Rru_A0784 0.15 +0.1
935,855 + Rru_A0784 0.15 -1.2
935,856 - Rru_A0784 0.15 +0.1
935,856 - Rru_A0784 0.15 -1.8
935,856 - Rru_A0784 0.15 -0.5
935,856 - Rru_A0784 0.15 +0.1
936,140 + Rru_A0784 0.37 -0.8
936,140 + Rru_A0784 0.37 +0.1
936,141 - Rru_A0784 0.37 +0.1
936,141 - Rru_A0784 0.37 -1.0
936,143 + Rru_A0784 0.37 +0.1
936,238 + Rru_A0784 0.44 -1.8
936,239 - Rru_A0784 0.44 +0.1
936,239 - Rru_A0784 0.44 -1.4
936,297 - Rru_A0784 0.49 +0.1
936,312 - Rru_A0784 0.50 +0.1
936,422 + Rru_A0784 0.58 -1.1
936,422 + Rru_A0784 0.58 +0.1
936,473 + Rru_A0784 0.62 +0.1
936,473 + Rru_A0784 0.62 +0.1
936,473 + Rru_A0784 0.62 +0.1
936,473 + Rru_A0784 0.62 +0.1
936,474 - Rru_A0784 0.62 +0.1
936,474 - Rru_A0784 0.62 -1.7
936,474 - Rru_A0784 0.62 +0.1
936,474 - Rru_A0784 0.62 -1.1
936,475 + Rru_A0784 0.62 +0.1
936,475 + Rru_A0784 0.62 -0.4
936,476 - Rru_A0784 0.62 -1.1
936,654 - Rru_A0784 0.75 +0.1
936,654 - Rru_A0784 0.75 -1.6
936,698 + Rru_A0784 0.79 +0.1
936,698 + Rru_A0784 0.79 +0.1
936,699 - Rru_A0784 0.79 +0.1
936,699 - Rru_A0784 0.79 -1.2
936,791 + Rru_A0784 0.86 +0.1
936,791 + Rru_A0784 0.86 -1.6
936,792 - Rru_A0784 0.86 -1.4
936,792 - Rru_A0784 0.86 +0.1
936,902 + -1.5
936,902 + +0.1
936,902 + +0.1
936,902 + +0.1
936,903 - +0.1
936,903 - +0.1
936,903 - +0.1
937,210 + +0.1
937,211 - +0.1
937,212 + +0.1
937,212 + +0.1
937,331 + -1.1
937,331 + +0.1
937,331 + +0.1
937,332 - -1.1
937,433 - Rru_A0785 0.13 +0.1
937,433 - Rru_A0785 0.13 +1.1
937,481 + Rru_A0785 0.18 -2.2
937,867 + Rru_A0785 0.59 +0.1
937,868 - Rru_A0785 0.59 +0.1

Or see this region's nucleotide sequence