Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0729

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0727 and Rru_A0728 overlap by 29 nucleotidesRru_A0728 and Rru_A0729 overlap by 4 nucleotidesRru_A0729 and Rru_A0730 overlap by 4 nucleotidesRru_A0730 and Rru_A0731 are separated by 166 nucleotides Rru_A0727: Rru_A0727 - hypothetical protein (NCBI), at 855,796 to 856,410 _A0727 Rru_A0728: Rru_A0728 - hypothetical protein (NCBI), at 856,382 to 856,843 _A0728 Rru_A0729: Rru_A0729 - Short-chain dehydrogenase/reductase SDR (NCBI), at 856,840 to 857,619 _A0729 Rru_A0730: Rru_A0730 - hypothetical protein (NCBI), at 857,616 to 858,434 _A0730 Rru_A0731: Rru_A0731 - hypothetical protein (NCBI), at 858,601 to 859,302 _A0731 Position (kb) 856 857 858Strain fitness (log2 ratio) -2 -1 0 1 2at 855.916 kb on + strand, within Rru_A0727at 855.916 kb on + strand, within Rru_A0727at 855.993 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.217 kb on + strand, within Rru_A0727at 856.218 kb on - strand, within Rru_A0727at 856.383 kb on + strandat 856.383 kb on + strandat 856.383 kb on + strandat 856.384 kb on - strandat 856.446 kb on + strand, within Rru_A0728at 856.446 kb on + strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.447 kb on - strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.651 kb on + strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.652 kb on - strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.658 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.773 kb on + strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.774 kb on - strand, within Rru_A0728at 856.785 kb on + strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728at 856.786 kb on - strand, within Rru_A0728at 856.862 kb on - strandat 856.862 kb on - strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.883 kb on + strandat 856.884 kb on - strandat 856.892 kb on + strandat 856.893 kb on - strandat 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.922 kb on + strand, within Rru_A0729at 856.923 kb on - strand, within Rru_A0729at 856.923 kb on - strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.124 kb on + strand, within Rru_A0729at 857.125 kb on - strand, within Rru_A0729at 857.153 kb on + strand, within Rru_A0729at 857.427 kb on + strand, within Rru_A0729at 857.427 kb on + strand, within Rru_A0729at 857.711 kb on + strand, within Rru_A0730at 857.711 kb on + strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.712 kb on - strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.713 kb on + strand, within Rru_A0730at 857.714 kb on - strand, within Rru_A0730at 857.886 kb on + strand, within Rru_A0730at 858.023 kb on + strand, within Rru_A0730at 858.024 kb on - strand, within Rru_A0730at 858.042 kb on - strand, within Rru_A0730at 858.042 kb on - strand, within Rru_A0730at 858.128 kb on - strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.156 kb on + strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.157 kb on - strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.268 kb on + strand, within Rru_A0730at 858.269 kb on - strand, within Rru_A0730at 858.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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855,916 + Rru_A0727 0.20 +0.0
855,916 + Rru_A0727 0.20 +0.0
855,993 + Rru_A0727 0.32 +0.0
856,217 + Rru_A0727 0.68 +0.0
856,217 + Rru_A0727 0.68 +0.0
856,218 - Rru_A0727 0.69 -0.6
856,383 + +0.0
856,383 + +0.0
856,383 + +0.0
856,384 - +0.0
856,446 + Rru_A0728 0.14 +0.0
856,446 + Rru_A0728 0.14 +0.0
856,447 - Rru_A0728 0.14 -1.4
856,447 - Rru_A0728 0.14 -0.6
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 +0.0
856,651 + Rru_A0728 0.58 -1.2
856,652 - Rru_A0728 0.58 +0.0
856,652 - Rru_A0728 0.58 -0.7
856,652 - Rru_A0728 0.58 -0.8
856,652 - Rru_A0728 0.58 -0.5
856,658 + Rru_A0728 0.60 +0.0
856,658 + Rru_A0728 0.60 +0.0
856,658 + Rru_A0728 0.60 +0.0
856,658 + Rru_A0728 0.60 -1.0
856,773 + Rru_A0728 0.85 -0.3
856,773 + Rru_A0728 0.85 +0.0
856,773 + Rru_A0728 0.85 -2.0
856,773 + Rru_A0728 0.85 -1.0
856,774 - Rru_A0728 0.85 +0.0
856,774 - Rru_A0728 0.85 +0.0
856,774 - Rru_A0728 0.85 -0.8
856,774 - Rru_A0728 0.85 +0.0
856,785 + Rru_A0728 0.87 +0.0
856,786 - Rru_A0728 0.87 +0.0
856,786 - Rru_A0728 0.87 +0.0
856,862 - +0.0
856,862 - +0.0
856,883 + +0.0
856,883 + +0.0
856,883 + +0.0
856,883 + -0.7
856,883 + +0.0
856,884 - +0.0
856,892 + +0.0
856,893 - +0.0
856,922 + Rru_A0729 0.11 +0.1
856,922 + Rru_A0729 0.11 +0.1
856,922 + Rru_A0729 0.11 +0.1
856,922 + Rru_A0729 0.11 +0.1
856,922 + Rru_A0729 0.11 +0.1
856,923 - Rru_A0729 0.11 -0.8
856,923 - Rru_A0729 0.11 -0.8
857,124 + Rru_A0729 0.36 -0.9
857,124 + Rru_A0729 0.36 +0.1
857,124 + Rru_A0729 0.36 +0.1
857,125 - Rru_A0729 0.37 +0.1
857,153 + Rru_A0729 0.40 -0.7
857,427 + Rru_A0729 0.75 +0.1
857,427 + Rru_A0729 0.75 +0.1
857,711 + Rru_A0730 0.12 -0.1
857,711 + Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 +0.1
857,712 - Rru_A0730 0.12 -0.9
857,713 + Rru_A0730 0.12 +0.1
857,713 + Rru_A0730 0.12 +0.1
857,713 + Rru_A0730 0.12 +0.1
857,713 + Rru_A0730 0.12 +0.1
857,714 - Rru_A0730 0.12 -0.9
857,886 + Rru_A0730 0.33 +0.1
858,023 + Rru_A0730 0.50 +2.6
858,024 - Rru_A0730 0.50 +0.1
858,042 - Rru_A0730 0.52 +0.1
858,042 - Rru_A0730 0.52 +0.1
858,128 - Rru_A0730 0.63 +0.1
858,156 + Rru_A0730 0.66 +0.1
858,156 + Rru_A0730 0.66 +0.1
858,156 + Rru_A0730 0.66 -0.1
858,156 + Rru_A0730 0.66 +0.1
858,157 - Rru_A0730 0.66 +0.1
858,157 - Rru_A0730 0.66 -1.5
858,157 - Rru_A0730 0.66 -0.8
858,157 - Rru_A0730 0.66 +0.1
858,157 - Rru_A0730 0.66 +0.6
858,268 + Rru_A0730 0.80 +0.1
858,268 + Rru_A0730 0.80 +0.1
858,268 + Rru_A0730 0.80 +0.1
858,268 + Rru_A0730 0.80 +0.1
858,269 - Rru_A0730 0.80 +0.1
858,601 - -1.3

Or see this region's nucleotide sequence