Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0674 and Rru_A0675 are separated by 805 nucleotides Rru_A0675 and Rru_A0676 are separated by 260 nucleotides
Rru_A0674: Rru_A0674 - Phage integrase (NCBI), at 795,904 to 797,064
_A0674
Rru_A0675: Rru_A0675 - hypothetical protein (NCBI), at 797,870 to 798,844
_A0675
Rru_A0676: Rru_A0676 - Transposase IS116/IS110/IS902 (NCBI), at 799,105 to 800,136
_A0676
Position (kb) 797
798
799 Strain fitness (log2 ratio) -1
0
1 at 796.887 kb on + strand, within Rru_A0674 at 796.888 kb on - strand, within Rru_A0674 at 796.905 kb on + strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.906 kb on - strand, within Rru_A0674 at 796.975 kb on - strand at 796.990 kb on + strand at 797.002 kb on + strand at 797.003 kb on - strand at 797.124 kb on + strand at 797.127 kb on + strand at 797.127 kb on + strand at 797.128 kb on - strand at 797.146 kb on - strand at 797.179 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.188 kb on - strand at 797.190 kb on - strand at 797.236 kb on + strand at 797.243 kb on + strand at 797.244 kb on - strand at 797.295 kb on + strand at 797.319 kb on - strand at 797.352 kb on + strand at 797.384 kb on + strand at 797.384 kb on + strand at 797.477 kb on + strand at 797.477 kb on + strand at 797.521 kb on + strand at 797.521 kb on + strand at 797.542 kb on + strand at 797.591 kb on + strand at 797.641 kb on + strand at 797.641 kb on + strand at 797.757 kb on - strand at 798.065 kb on - strand, within Rru_A0675 at 798.143 kb on + strand, within Rru_A0675 at 798.144 kb on - strand, within Rru_A0675 at 798.237 kb on + strand, within Rru_A0675 at 798.340 kb on + strand, within Rru_A0675 at 798.341 kb on - strand, within Rru_A0675 at 798.370 kb on - strand, within Rru_A0675 at 798.532 kb on + strand, within Rru_A0675 at 798.540 kb on + strand, within Rru_A0675 at 798.543 kb on + strand, within Rru_A0675 at 798.835 kb on + strand at 798.977 kb on - strand at 799.018 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 796,887 + Rru_A0674 0.85 -0.8 796,888 - Rru_A0674 0.85 -1.3 796,905 + Rru_A0674 0.86 +0.0 796,906 - Rru_A0674 0.86 +0.0 796,906 - Rru_A0674 0.86 +0.0 796,906 - Rru_A0674 0.86 +0.0 796,975 - +0.0 796,990 + -1.0 797,002 + +0.0 797,003 - -1.0 797,124 + -1.3 797,127 + -1.0 797,127 + +0.0 797,128 - +0.0 797,146 - -1.1 797,179 - +0.0 797,188 - +0.0 797,188 - -1.0 797,188 - +0.0 797,190 - +0.0 797,236 + +0.0 797,243 + +0.0 797,244 - +0.0 797,295 + +0.0 797,319 - -1.5 797,352 + +0.0 797,384 + -1.7 797,384 + -1.0 797,477 + +0.0 797,477 + +0.0 797,521 + -1.0 797,521 + +0.0 797,542 + +0.0 797,591 + +0.0 797,641 + +0.0 797,641 + +0.0 797,757 - +0.0 798,065 - Rru_A0675 0.20 -1.4 798,143 + Rru_A0675 0.28 -1.5 798,144 - Rru_A0675 0.28 -1.3 798,237 + Rru_A0675 0.38 +0.0 798,340 + Rru_A0675 0.48 -1.2 798,341 - Rru_A0675 0.48 +0.0 798,370 - Rru_A0675 0.51 +0.0 798,532 + Rru_A0675 0.68 -1.4 798,540 + Rru_A0675 0.69 -1.0 798,543 + Rru_A0675 0.69 -1.6 798,835 + +0.0 798,977 - +0.0 799,018 - +0.0
Or see this region's nucleotide sequence