Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0662 and Rru_A0663 are separated by 405 nucleotides Rru_A0663 and Rru_A0664 are separated by 232 nucleotides Rru_A0664 and Rru_A0665 are separated by 0 nucleotides Rru_A0665 and Rru_A0666 overlap by 4 nucleotides
Rru_A0662: Rru_A0662 - Translation initiation factor IF-1 (NCBI), at 786,071 to 786,358
_A0662
Rru_A0663: Rru_A0663 - Cold-shock DNA-binding domain protein (NCBI), at 786,764 to 786,970
_A0663
Rru_A0664: Rru_A0664 - Signal Transduction Histidine Kinase (NCBI), at 787,203 to 788,237
_A0664
Rru_A0665: Rru_A0665 - Response regulator receiver domain protein (CheY) (NCBI), at 788,238 to 788,684
_A0665
Rru_A0666: Rru_A0666 - Multi-sensor Signal Transduction Histidine Kinase (NCBI), at 788,681 to 790,420
_A0666
Position (kb) 787
788
789 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 786.436 kb on - strand at 786.582 kb on + strand at 786.582 kb on + strand at 786.583 kb on - strand at 786.583 kb on - strand at 786.766 kb on - strand at 786.782 kb on - strand at 786.880 kb on + strand, within Rru_A0663 at 786.965 kb on - strand at 786.971 kb on + strand at 786.999 kb on + strand at 786.999 kb on + strand at 787.097 kb on + strand at 787.115 kb on + strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.116 kb on - strand at 787.120 kb on - strand at 787.144 kb on + strand at 787.252 kb on + strand at 787.435 kb on + strand, within Rru_A0664 at 787.435 kb on + strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.436 kb on - strand, within Rru_A0664 at 787.439 kb on + strand, within Rru_A0664 at 787.439 kb on + strand, within Rru_A0664 at 787.440 kb on - strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.630 kb on + strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.631 kb on - strand, within Rru_A0664 at 787.757 kb on + strand, within Rru_A0664 at 787.757 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.930 kb on + strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.931 kb on - strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.993 kb on + strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 787.994 kb on - strand, within Rru_A0664 at 788.207 kb on + strand at 788.209 kb on + strand at 788.209 kb on + strand at 788.209 kb on + strand at 788.210 kb on - strand at 788.210 kb on - strand at 788.239 kb on + strand at 788.240 kb on - strand at 788.327 kb on + strand, within Rru_A0665 at 788.330 kb on + strand, within Rru_A0665 at 788.332 kb on + strand, within Rru_A0665 at 788.333 kb on - strand, within Rru_A0665 at 788.703 kb on + strand at 788.711 kb on + strand at 788.712 kb on - strand at 788.712 kb on - strand at 788.723 kb on + strand at 788.723 kb on + strand at 788.723 kb on + strand at 788.724 kb on - strand at 788.724 kb on - strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.729 kb on + strand at 788.730 kb on - strand at 788.731 kb on + strand at 788.731 kb on + strand at 788.731 kb on + strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.732 kb on - strand at 788.988 kb on + strand, within Rru_A0666 at 788.988 kb on + strand, within Rru_A0666 at 788.989 kb on - strand, within Rru_A0666
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 786,436 - -1.0 786,582 + -1.3 786,582 + +0.0 786,583 - +0.0 786,583 - +0.0 786,766 - +0.0 786,782 - +0.0 786,880 + Rru_A0663 0.56 +0.0 786,965 - +0.0 786,971 + +0.0 786,999 + +0.0 786,999 + -1.1 787,097 + -1.9 787,115 + -1.6 787,116 - -1.2 787,116 - +0.0 787,116 - -1.3 787,120 - +0.0 787,144 + -1.5 787,252 + +0.0 787,435 + Rru_A0664 0.22 +0.0 787,435 + Rru_A0664 0.22 -1.6 787,436 - Rru_A0664 0.23 +0.0 787,436 - Rru_A0664 0.23 +0.0 787,436 - Rru_A0664 0.23 +0.0 787,436 - Rru_A0664 0.23 +0.0 787,436 - Rru_A0664 0.23 +0.0 787,439 + Rru_A0664 0.23 -4.1 787,439 + Rru_A0664 0.23 +0.0 787,440 - Rru_A0664 0.23 +0.0 787,630 + Rru_A0664 0.41 -1.5 787,630 + Rru_A0664 0.41 +0.0 787,630 + Rru_A0664 0.41 -1.6 787,630 + Rru_A0664 0.41 -1.2 787,630 + Rru_A0664 0.41 -1.2 787,631 - Rru_A0664 0.41 -1.6 787,631 - Rru_A0664 0.41 +0.0 787,631 - Rru_A0664 0.41 +0.0 787,631 - Rru_A0664 0.41 -1.4 787,631 - Rru_A0664 0.41 +0.0 787,757 + Rru_A0664 0.54 -1.0 787,757 + Rru_A0664 0.54 -1.0 787,930 + Rru_A0664 0.70 +0.0 787,930 + Rru_A0664 0.70 -1.0 787,930 + Rru_A0664 0.70 +0.0 787,930 + Rru_A0664 0.70 -1.2 787,930 + Rru_A0664 0.70 +0.0 787,931 - Rru_A0664 0.70 +0.0 787,931 - Rru_A0664 0.70 +0.0 787,931 - Rru_A0664 0.70 -2.6 787,931 - Rru_A0664 0.70 +0.0 787,993 + Rru_A0664 0.76 +0.0 787,993 + Rru_A0664 0.76 +0.0 787,993 + Rru_A0664 0.76 -1.0 787,993 + Rru_A0664 0.76 +0.0 787,994 - Rru_A0664 0.76 +0.0 787,994 - Rru_A0664 0.76 -1.4 787,994 - Rru_A0664 0.76 +0.0 787,994 - Rru_A0664 0.76 -1.0 787,994 - Rru_A0664 0.76 -1.6 788,207 + +0.0 788,209 + +0.0 788,209 + +0.0 788,209 + +0.0 788,210 - +0.0 788,210 - +0.0 788,239 + +0.0 788,240 - +0.0 788,327 + Rru_A0665 0.20 +0.0 788,330 + Rru_A0665 0.21 +0.0 788,332 + Rru_A0665 0.21 +0.0 788,333 - Rru_A0665 0.21 +0.0 788,703 + +0.0 788,711 + +0.0 788,712 - +0.0 788,712 - -1.0 788,723 + +0.0 788,723 + -1.0 788,723 + +0.0 788,724 - -1.2 788,724 - +0.0 788,729 + +0.0 788,729 + +0.0 788,729 + +0.0 788,729 + -1.4 788,729 + +0.0 788,729 + +0.0 788,729 + -1.1 788,730 - +0.0 788,731 + +0.0 788,731 + +0.0 788,731 + +0.0 788,732 - +0.0 788,732 - -0.7 788,732 - -0.4 788,732 - +0.0 788,732 - +0.0 788,988 + Rru_A0666 0.18 +0.0 788,988 + Rru_A0666 0.18 +0.0 788,989 - Rru_A0666 0.18 -1.7
Or see this region's nucleotide sequence