Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0301

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0299 and Rru_A0300 are separated by 32 nucleotidesRru_A0300 and Rru_A0301 are separated by 81 nucleotidesRru_A0301 and Rru_A0302 are separated by 169 nucleotides Rru_A0299: Rru_A0299 - Glutamine amidotransferase class-I (NCBI), at 366,429 to 367,151 _A0299 Rru_A0300: Rru_A0300 - Aminotransferase, class IV (NCBI), at 367,184 to 368,038 _A0300 Rru_A0301: Rru_A0301 - Alkylhydroperoxidase AhpD core (NCBI), at 368,120 to 368,533 _A0301 Rru_A0302: Rru_A0302 - Hydrogenase accessory protein HypB (NCBI), at 368,703 to 369,593 _A0302 Position (kb) 368 369Strain fitness (log2 ratio) -2 -1 0 1at 367.149 kb on + strandat 367.150 kb on - strandat 367.150 kb on - strandat 367.211 kb on + strandat 367.211 kb on + strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.212 kb on - strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.214 kb on + strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.215 kb on - strandat 367.216 kb on + strandat 367.216 kb on + strandat 367.217 kb on - strandat 367.217 kb on - strandat 367.217 kb on - strandat 367.240 kb on + strandat 367.241 kb on - strandat 367.241 kb on - strandat 367.460 kb on + strand, within Rru_A0300at 367.460 kb on + strand, within Rru_A0300at 367.460 kb on + strand, within Rru_A0300at 367.461 kb on - strand, within Rru_A0300at 367.461 kb on - strand, within Rru_A0300at 367.461 kb on - strand, within Rru_A0300at 367.461 kb on - strand, within Rru_A0300at 367.463 kb on - strand, within Rru_A0300at 367.463 kb on - strand, within Rru_A0300at 367.475 kb on + strand, within Rru_A0300at 367.475 kb on + strand, within Rru_A0300at 367.476 kb on - strand, within Rru_A0300at 367.476 kb on - strand, within Rru_A0300at 367.476 kb on - strand, within Rru_A0300at 367.476 kb on - strand, within Rru_A0300at 367.661 kb on - strand, within Rru_A0300at 367.933 kb on + strand, within Rru_A0300at 368.015 kb on + strandat 368.016 kb on - strandat 368.037 kb on - strandat 368.057 kb on + strandat 368.058 kb on - strandat 368.087 kb on + strandat 368.087 kb on + strandat 368.225 kb on - strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.339 kb on + strand, within Rru_A0301at 368.340 kb on - strand, within Rru_A0301at 368.340 kb on - strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.362 kb on + strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.363 kb on - strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.372 kb on + strand, within Rru_A0301at 368.373 kb on - strand, within Rru_A0301at 368.532 kb on - strandat 368.611 kb on + strandat 368.612 kb on - strandat 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.212 kb on + strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302at 369.213 kb on - strand, within Rru_A0302

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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367,149 + +0.1
367,150 - +0.1
367,150 - +0.1
367,211 + -1.4
367,211 + +0.1
367,212 - -1.8
367,212 - +0.1
367,212 - +0.1
367,212 - +0.1
367,212 - +0.1
367,212 - +0.1
367,212 - -0.1
367,212 - -1.1
367,214 + -1.8
367,214 + -1.0
367,214 + +0.1
367,214 + +0.1
367,214 + +0.1
367,214 + +0.1
367,214 + +0.1
367,214 + -0.7
367,214 + +0.1
367,214 + -0.9
367,214 + +0.1
367,214 + +0.1
367,214 + -1.2
367,214 + +0.1
367,215 - +0.1
367,215 - -1.4
367,215 - -0.9
367,215 - +0.1
367,215 - +0.1
367,215 - -0.6
367,215 - +0.1
367,215 - -1.0
367,215 - +0.1
367,215 - -1.4
367,216 + +0.1
367,216 + +0.1
367,217 - +0.1
367,217 - -1.2
367,217 - +0.1
367,240 + -1.3
367,241 - +0.1
367,241 - +0.1
367,460 + Rru_A0300 0.32 -1.3
367,460 + Rru_A0300 0.32 +0.1
367,460 + Rru_A0300 0.32 -1.3
367,461 - Rru_A0300 0.32 +0.1
367,461 - Rru_A0300 0.32 +0.1
367,461 - Rru_A0300 0.32 -1.2
367,461 - Rru_A0300 0.32 +0.1
367,463 - Rru_A0300 0.33 +0.1
367,463 - Rru_A0300 0.33 -0.5
367,475 + Rru_A0300 0.34 -0.9
367,475 + Rru_A0300 0.34 +0.1
367,476 - Rru_A0300 0.34 +0.1
367,476 - Rru_A0300 0.34 +0.1
367,476 - Rru_A0300 0.34 -1.5
367,476 - Rru_A0300 0.34 -1.7
367,661 - Rru_A0300 0.56 -0.7
367,933 + Rru_A0300 0.88 +0.1
368,015 + -0.7
368,016 - +0.1
368,037 - -0.8
368,057 + +0.1
368,058 - +0.1
368,087 + +0.1
368,087 + +0.1
368,225 - Rru_A0301 0.25 +0.1
368,339 + Rru_A0301 0.53 -0.4
368,339 + Rru_A0301 0.53 -1.2
368,339 + Rru_A0301 0.53 -1.5
368,340 - Rru_A0301 0.53 +0.1
368,340 - Rru_A0301 0.53 +0.1
368,362 + Rru_A0301 0.58 +0.1
368,362 + Rru_A0301 0.58 +0.1
368,362 + Rru_A0301 0.58 +0.1
368,363 - Rru_A0301 0.59 +0.1
368,363 - Rru_A0301 0.59 +0.1
368,363 - Rru_A0301 0.59 +0.1
368,363 - Rru_A0301 0.59 +0.1
368,363 - Rru_A0301 0.59 +0.1
368,372 + Rru_A0301 0.61 -0.9
368,372 + Rru_A0301 0.61 -0.9
368,372 + Rru_A0301 0.61 +0.1
368,373 - Rru_A0301 0.61 +0.1
368,532 - +0.1
368,611 + -1.1
368,612 - +0.1
369,212 + Rru_A0302 0.57 +0.1
369,212 + Rru_A0302 0.57 +0.1
369,212 + Rru_A0302 0.57 +0.1
369,212 + Rru_A0302 0.57 -1.0
369,212 + Rru_A0302 0.57 +1.5
369,213 - Rru_A0302 0.57 +0.1
369,213 - Rru_A0302 0.57 +0.1
369,213 - Rru_A0302 0.57 +0.1

Or see this region's nucleotide sequence