Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0255

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0254 and Rru_A0255 are separated by 153 nucleotidesRru_A0255 and Rru_A0256 overlap by 4 nucleotidesRru_A0256 and Rru_A0257 are separated by 70 nucleotides Rru_A0254: Rru_A0254 - NAD-dependent epimerase/dehydratase (NCBI), at 315,943 to 316,932 _A0254 Rru_A0255: Rru_A0255 - hypothetical protein (NCBI), at 317,086 to 317,742 _A0255 Rru_A0256: Rru_A0256 - GCN5-related N-acetyltransferase (NCBI), at 317,739 to 318,245 _A0256 Rru_A0257: Rru_A0257 - Protein of unknown function DUF898 (NCBI), at 318,316 to 319,392 _A0257 Position (kb) 317 318Strain fitness (log2 ratio) -2 -1 0 1at 316.115 kb on + strand, within Rru_A0254at 316.116 kb on - strand, within Rru_A0254at 316.116 kb on - strand, within Rru_A0254at 316.260 kb on + strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.261 kb on - strand, within Rru_A0254at 316.325 kb on - strand, within Rru_A0254at 316.399 kb on + strand, within Rru_A0254at 316.400 kb on - strand, within Rru_A0254at 316.454 kb on - strand, within Rru_A0254at 316.465 kb on + strand, within Rru_A0254at 316.465 kb on + strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.466 kb on - strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.630 kb on + strand, within Rru_A0254at 316.631 kb on - strand, within Rru_A0254at 316.762 kb on + strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.813 kb on - strand, within Rru_A0254at 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.891 kb on + strandat 316.892 kb on - strandat 316.892 kb on - strandat 316.930 kb on + strandat 317.306 kb on - strand, within Rru_A0255at 317.306 kb on - strand, within Rru_A0255at 317.793 kb on + strand, within Rru_A0256at 317.793 kb on + strand, within Rru_A0256at 317.793 kb on + strand, within Rru_A0256at 317.794 kb on - strand, within Rru_A0256at 317.794 kb on - strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.003 kb on + strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.004 kb on - strand, within Rru_A0256at 318.005 kb on + strand, within Rru_A0256at 318.005 kb on + strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.006 kb on - strand, within Rru_A0256at 318.207 kb on + strandat 318.208 kb on - strandat 318.243 kb on + strandat 318.244 kb on - strandat 318.277 kb on + strandat 318.278 kb on - strandat 318.278 kb on - strandat 318.404 kb on - strandat 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.490 kb on + strand, within Rru_A0257at 318.554 kb on + strand, within Rru_A0257at 318.595 kb on + strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.596 kb on - strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.649 kb on + strand, within Rru_A0257at 318.650 kb on - strand, within Rru_A0257

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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316,115 + Rru_A0254 0.17 -0.6
316,116 - Rru_A0254 0.17 +0.1
316,116 - Rru_A0254 0.17 +0.1
316,260 + Rru_A0254 0.32 +0.1
316,261 - Rru_A0254 0.32 +0.1
316,261 - Rru_A0254 0.32 -1.4
316,261 - Rru_A0254 0.32 +0.1
316,261 - Rru_A0254 0.32 -2.0
316,261 - Rru_A0254 0.32 +0.1
316,325 - Rru_A0254 0.39 -0.9
316,399 + Rru_A0254 0.46 +0.1
316,400 - Rru_A0254 0.46 +0.1
316,454 - Rru_A0254 0.52 -1.4
316,465 + Rru_A0254 0.53 +0.1
316,465 + Rru_A0254 0.53 +0.1
316,466 - Rru_A0254 0.53 -1.6
316,466 - Rru_A0254 0.53 +0.1
316,466 - Rru_A0254 0.53 -1.6
316,466 - Rru_A0254 0.53 +0.1
316,466 - Rru_A0254 0.53 +0.1
316,630 + Rru_A0254 0.69 -0.9
316,630 + Rru_A0254 0.69 +0.1
316,630 + Rru_A0254 0.69 +0.1
316,630 + Rru_A0254 0.69 +0.1
316,630 + Rru_A0254 0.69 +0.1
316,630 + Rru_A0254 0.69 +0.1
316,631 - Rru_A0254 0.69 -1.4
316,762 + Rru_A0254 0.83 +0.1
316,813 - Rru_A0254 0.88 +0.1
316,813 - Rru_A0254 0.88 +0.1
316,813 - Rru_A0254 0.88 -1.3
316,891 + +0.1
316,891 + -1.3
316,891 + +0.1
316,891 + -0.9
316,891 + +0.1
316,892 - +0.1
316,892 - +0.1
316,930 + -0.9
317,306 - Rru_A0255 0.33 +0.1
317,306 - Rru_A0255 0.33 +0.1
317,793 + Rru_A0256 0.11 +0.1
317,793 + Rru_A0256 0.11 +0.1
317,793 + Rru_A0256 0.11 +0.1
317,794 - Rru_A0256 0.11 +0.1
317,794 - Rru_A0256 0.11 +0.1
318,003 + Rru_A0256 0.52 +0.1
318,003 + Rru_A0256 0.52 +0.1
318,003 + Rru_A0256 0.52 +0.1
318,003 + Rru_A0256 0.52 +0.1
318,003 + Rru_A0256 0.52 -1.2
318,004 - Rru_A0256 0.52 +0.1
318,004 - Rru_A0256 0.52 +0.1
318,004 - Rru_A0256 0.52 +0.1
318,004 - Rru_A0256 0.52 +0.1
318,004 - Rru_A0256 0.52 +0.1
318,005 + Rru_A0256 0.52 +0.1
318,005 + Rru_A0256 0.52 +0.1
318,006 - Rru_A0256 0.53 +0.1
318,006 - Rru_A0256 0.53 +0.1
318,006 - Rru_A0256 0.53 +0.1
318,006 - Rru_A0256 0.53 +0.1
318,207 + +0.1
318,208 - +0.1
318,243 + +0.1
318,244 - +0.1
318,277 + -0.9
318,278 - +0.1
318,278 - +0.1
318,404 - +0.1
318,490 + Rru_A0257 0.16 +0.1
318,490 + Rru_A0257 0.16 +0.1
318,490 + Rru_A0257 0.16 -2.2
318,554 + Rru_A0257 0.22 +0.1
318,595 + Rru_A0257 0.26 -2.2
318,596 - Rru_A0257 0.26 +0.1
318,596 - Rru_A0257 0.26 +0.1
318,649 + Rru_A0257 0.31 +0.1
318,649 + Rru_A0257 0.31 -0.5
318,649 + Rru_A0257 0.31 +0.1
318,649 + Rru_A0257 0.31 +0.1
318,650 - Rru_A0257 0.31 +0.1

Or see this region's nucleotide sequence