Experiment: L-Malic Acid (C) and N2; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0218 and Rru_A0219 are separated by 234 nucleotides Rru_A0219 and Rru_A0220 are separated by 65 nucleotides Rru_A0220 and Rru_A0221 are separated by 197 nucleotides
Rru_A0218: Rru_A0218 - Acetyl-CoA carboxylase (NCBI), at 270,069 to 271,034
_A0218
Rru_A0219: Rru_A0219 - hypothetical protein (NCBI), at 271,269 to 271,517
_A0219
Rru_A0220: Rru_A0220 - hypothetical protein (NCBI), at 271,583 to 272,059
_A0220
Rru_A0221: Rru_A0221 - Phosphoglycerate kinase (NCBI), at 272,257 to 273,450
_A0221
Position (kb) 271
272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 271.033 kb on - strand at 271.033 kb on - strand at 271.135 kb on - strand at 271.135 kb on - strand at 271.137 kb on - strand at 271.137 kb on - strand at 271.236 kb on + strand at 271.236 kb on + strand at 271.236 kb on + strand at 271.237 kb on - strand at 271.237 kb on - strand at 271.295 kb on + strand, within Rru_A0219 at 271.295 kb on + strand, within Rru_A0219 at 271.296 kb on - strand, within Rru_A0219 at 271.296 kb on - strand, within Rru_A0219 at 271.301 kb on + strand, within Rru_A0219 at 271.302 kb on - strand, within Rru_A0219 at 271.383 kb on + strand, within Rru_A0219 at 271.383 kb on + strand, within Rru_A0219 at 271.434 kb on + strand, within Rru_A0219 at 271.434 kb on + strand, within Rru_A0219 at 271.434 kb on + strand, within Rru_A0219 at 271.435 kb on - strand, within Rru_A0219 at 271.435 kb on - strand, within Rru_A0219 at 271.435 kb on - strand, within Rru_A0219 at 271.438 kb on - strand, within Rru_A0219 at 271.438 kb on - strand, within Rru_A0219 at 271.515 kb on + strand at 271.515 kb on + strand at 271.516 kb on - strand at 271.516 kb on - strand at 271.516 kb on - strand at 271.516 kb on - strand at 271.516 kb on - strand at 271.831 kb on - strand, within Rru_A0220 at 271.983 kb on + strand, within Rru_A0220 at 271.983 kb on + strand, within Rru_A0220 at 272.152 kb on - strand at 272.166 kb on - strand at 272.258 kb on + strand at 272.259 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light remove 271,033 - -0.9 271,033 - -0.5 271,135 - +0.1 271,135 - +0.1 271,137 - -1.7 271,137 - +0.5 271,236 + +0.1 271,236 + +0.1 271,236 + +0.1 271,237 - +0.1 271,237 - -1.9 271,295 + Rru_A0219 0.10 -1.6 271,295 + Rru_A0219 0.10 -1.2 271,296 - Rru_A0219 0.11 -0.5 271,296 - Rru_A0219 0.11 -0.6 271,301 + Rru_A0219 0.13 +0.1 271,302 - Rru_A0219 0.13 -0.7 271,383 + Rru_A0219 0.46 -0.9 271,383 + Rru_A0219 0.46 +0.1 271,434 + Rru_A0219 0.66 +0.1 271,434 + Rru_A0219 0.66 +0.1 271,434 + Rru_A0219 0.66 -0.8 271,435 - Rru_A0219 0.67 +0.1 271,435 - Rru_A0219 0.67 +0.1 271,435 - Rru_A0219 0.67 +0.1 271,438 - Rru_A0219 0.68 -0.7 271,438 - Rru_A0219 0.68 +0.1 271,515 + +0.1 271,515 + -1.3 271,516 - -0.5 271,516 - -0.4 271,516 - -0.5 271,516 - +0.1 271,516 - -1.0 271,831 - Rru_A0220 0.52 -0.4 271,983 + Rru_A0220 0.84 +0.1 271,983 + Rru_A0220 0.84 -0.6 272,152 - +1.3 272,166 - +0.1 272,258 + +0.1 272,259 - +0.1
Or see this region's nucleotide sequence