Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0127

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0125 and Rru_A0126 overlap by 4 nucleotidesRru_A0126 and Rru_A0127 overlap by 4 nucleotidesRru_A0127 and Rru_A0128 are separated by 9 nucleotides Rru_A0125: Rru_A0125 - diguanylate phosphodiesterase (EAL domain) (NCBI), at 145,605 to 146,954 _A0125 Rru_A0126: Rru_A0126 - ABC transporter component (NCBI), at 146,951 to 147,766 _A0126 Rru_A0127: Rru_A0127 - ABC-2 transporter component (NCBI), at 147,763 to 148,611 _A0127 Rru_A0128: Rru_A0128 - Na+/H+ antiporter NhaA (NCBI), at 148,621 to 149,820 _A0128 Position (kb) 147 148 149Strain fitness (log2 ratio) -2 -1 0 1at 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.886 kb on + strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.887 kb on - strandat 146.997 kb on - strandat 147.178 kb on + strand, within Rru_A0126at 147.178 kb on + strand, within Rru_A0126at 147.178 kb on + strand, within Rru_A0126at 147.178 kb on + strand, within Rru_A0126at 147.179 kb on - strand, within Rru_A0126at 147.179 kb on - strand, within Rru_A0126at 147.230 kb on + strand, within Rru_A0126at 147.230 kb on + strand, within Rru_A0126at 147.231 kb on - strand, within Rru_A0126at 147.231 kb on - strand, within Rru_A0126at 147.278 kb on + strand, within Rru_A0126at 147.278 kb on + strand, within Rru_A0126at 147.278 kb on + strand, within Rru_A0126at 147.279 kb on - strand, within Rru_A0126at 147.279 kb on - strand, within Rru_A0126at 147.291 kb on - strand, within Rru_A0126at 147.553 kb on + strand, within Rru_A0126at 147.553 kb on + strand, within Rru_A0126at 147.554 kb on - strand, within Rru_A0126at 147.554 kb on - strand, within Rru_A0126at 147.866 kb on - strand, within Rru_A0127at 147.907 kb on + strand, within Rru_A0127at 148.120 kb on + strand, within Rru_A0127at 148.204 kb on + strand, within Rru_A0127at 148.204 kb on + strand, within Rru_A0127at 148.204 kb on + strand, within Rru_A0127at 148.204 kb on + strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.205 kb on - strand, within Rru_A0127at 148.219 kb on + strand, within Rru_A0127at 148.219 kb on + strand, within Rru_A0127at 148.219 kb on + strand, within Rru_A0127at 148.220 kb on - strand, within Rru_A0127at 148.220 kb on - strand, within Rru_A0127at 148.220 kb on - strand, within Rru_A0127at 148.220 kb on - strand, within Rru_A0127at 148.378 kb on + strand, within Rru_A0127at 148.378 kb on + strand, within Rru_A0127at 148.378 kb on + strand, within Rru_A0127at 148.378 kb on + strand, within Rru_A0127at 148.379 kb on - strand, within Rru_A0127at 148.379 kb on - strand, within Rru_A0127at 148.379 kb on - strand, within Rru_A0127at 148.379 kb on - strand, within Rru_A0127at 148.379 kb on - strand, within Rru_A0127at 148.382 kb on - strand, within Rru_A0127at 148.423 kb on + strand, within Rru_A0127at 148.528 kb on + strandat 148.529 kb on - strandat 148.609 kb on + strandat 148.610 kb on - strandat 149.022 kb on - strand, within Rru_A0128at 149.022 kb on - strand, within Rru_A0128at 149.227 kb on - strand, within Rru_A0128at 149.227 kb on - strand, within Rru_A0128at 149.295 kb on - strand, within Rru_A0128at 149.484 kb on - strand, within Rru_A0128at 149.484 kb on - strand, within Rru_A0128at 149.484 kb on - strand, within Rru_A0128

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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146,886 + +0.0
146,886 + -1.0
146,886 + +0.0
146,886 + +0.0
146,886 + +0.0
146,886 + +0.0
146,886 + +0.0
146,886 + -1.0
146,886 + -1.5
146,886 + +0.0
146,886 + +0.0
146,887 - -2.0
146,887 - -0.9
146,887 - +0.0
146,887 - -1.5
146,887 - -1.0
146,887 - -1.2
146,887 - -1.6
146,887 - +0.0
146,887 - +0.0
146,997 - +0.0
147,178 + Rru_A0126 0.28 -1.0
147,178 + Rru_A0126 0.28 +0.0
147,178 + Rru_A0126 0.28 +0.0
147,178 + Rru_A0126 0.28 -1.0
147,179 - Rru_A0126 0.28 +0.0
147,179 - Rru_A0126 0.28 +0.0
147,230 + Rru_A0126 0.34 -1.0
147,230 + Rru_A0126 0.34 -1.0
147,231 - Rru_A0126 0.34 -1.2
147,231 - Rru_A0126 0.34 +0.0
147,278 + Rru_A0126 0.40 +0.0
147,278 + Rru_A0126 0.40 +0.0
147,278 + Rru_A0126 0.40 -1.0
147,279 - Rru_A0126 0.40 +0.0
147,279 - Rru_A0126 0.40 +0.0
147,291 - Rru_A0126 0.42 +0.0
147,553 + Rru_A0126 0.74 +0.0
147,553 + Rru_A0126 0.74 -0.2
147,554 - Rru_A0126 0.74 +0.0
147,554 - Rru_A0126 0.74 +0.0
147,866 - Rru_A0127 0.12 +0.0
147,907 + Rru_A0127 0.17 -1.0
148,120 + Rru_A0127 0.42 +0.0
148,204 + Rru_A0127 0.52 -0.6
148,204 + Rru_A0127 0.52 +0.0
148,204 + Rru_A0127 0.52 +0.0
148,204 + Rru_A0127 0.52 -0.8
148,205 - Rru_A0127 0.52 +0.0
148,205 - Rru_A0127 0.52 +0.0
148,205 - Rru_A0127 0.52 -1.0
148,205 - Rru_A0127 0.52 -1.0
148,205 - Rru_A0127 0.52 +0.0
148,205 - Rru_A0127 0.52 -1.5
148,205 - Rru_A0127 0.52 +0.0
148,219 + Rru_A0127 0.54 +0.0
148,219 + Rru_A0127 0.54 -1.3
148,219 + Rru_A0127 0.54 +0.0
148,220 - Rru_A0127 0.54 -1.4
148,220 - Rru_A0127 0.54 +0.0
148,220 - Rru_A0127 0.54 -1.1
148,220 - Rru_A0127 0.54 -1.0
148,378 + Rru_A0127 0.72 +0.0
148,378 + Rru_A0127 0.72 -1.2
148,378 + Rru_A0127 0.72 -0.3
148,378 + Rru_A0127 0.72 +0.0
148,379 - Rru_A0127 0.73 +0.0
148,379 - Rru_A0127 0.73 +0.0
148,379 - Rru_A0127 0.73 -0.8
148,379 - Rru_A0127 0.73 +0.0
148,379 - Rru_A0127 0.73 +0.0
148,382 - Rru_A0127 0.73 -0.7
148,423 + Rru_A0127 0.78 +0.0
148,528 + +0.0
148,529 - +0.0
148,609 + -1.0
148,610 - +0.0
149,022 - Rru_A0128 0.33 +0.0
149,022 - Rru_A0128 0.33 -1.1
149,227 - Rru_A0128 0.51 -1.4
149,227 - Rru_A0128 0.51 -1.5
149,295 - Rru_A0128 0.56 +0.0
149,484 - Rru_A0128 0.72 +0.0
149,484 - Rru_A0128 0.72 +0.0
149,484 - Rru_A0128 0.72 -1.0

Or see this region's nucleotide sequence