Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0108

Experiment: L-Malic Acid (C) and N2; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0106 and Rru_A0107 overlap by 4 nucleotidesRru_A0107 and Rru_A0108 are separated by 14 nucleotidesRru_A0108 and Rru_A0109 are separated by 118 nucleotides Rru_A0106: Rru_A0106 - TPR repeat, Tetratricopeptide TPR_4 (NCBI), at 125,246 to 126,043 _A0106 Rru_A0107: Rru_A0107 - MSHA biogenesis protein MshM (NCBI), at 126,040 to 126,951 _A0107 Rru_A0108: Rru_A0108 - Peptidase A24A, prepilin type IV (NCBI), at 126,966 to 127,592 _A0108 Rru_A0109: Rru_A0109 - type II and III secretion system protein (NCBI), at 127,711 to 129,354 _A0109 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1at 126.219 kb on + strand, within Rru_A0107at 126.220 kb on - strand, within Rru_A0107at 126.226 kb on + strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.227 kb on - strand, within Rru_A0107at 126.640 kb on + strand, within Rru_A0107at 126.640 kb on + strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.641 kb on - strand, within Rru_A0107at 126.778 kb on + strand, within Rru_A0107at 127.149 kb on + strand, within Rru_A0108at 127.149 kb on + strand, within Rru_A0108at 127.149 kb on + strand, within Rru_A0108at 127.356 kb on + strand, within Rru_A0108at 127.656 kb on - strandat 127.661 kb on + strandat 127.674 kb on - strandat 127.674 kb on - strandat 128.106 kb on + strand, within Rru_A0109at 128.107 kb on - strand, within Rru_A0109at 128.107 kb on - strand, within Rru_A0109at 128.164 kb on + strand, within Rru_A0109at 128.164 kb on + strand, within Rru_A0109at 128.165 kb on - strand, within Rru_A0109at 128.165 kb on - strand, within Rru_A0109at 128.165 kb on - strand, within Rru_A0109at 128.165 kb on - strand, within Rru_A0109at 128.165 kb on - strand, within Rru_A0109at 128.181 kb on + strand, within Rru_A0109

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) and N2; no light
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126,219 + Rru_A0107 0.20 +0.0
126,220 - Rru_A0107 0.20 +0.0
126,226 + Rru_A0107 0.20 +0.0
126,227 - Rru_A0107 0.21 +0.0
126,227 - Rru_A0107 0.21 -0.5
126,227 - Rru_A0107 0.21 +0.0
126,227 - Rru_A0107 0.21 +0.0
126,227 - Rru_A0107 0.21 +0.0
126,640 + Rru_A0107 0.66 -1.6
126,640 + Rru_A0107 0.66 +0.0
126,641 - Rru_A0107 0.66 -0.6
126,641 - Rru_A0107 0.66 +0.0
126,641 - Rru_A0107 0.66 -1.0
126,778 + Rru_A0107 0.81 -1.2
127,149 + Rru_A0108 0.29 -0.7
127,149 + Rru_A0108 0.29 -0.8
127,149 + Rru_A0108 0.29 -0.4
127,356 + Rru_A0108 0.62 +0.0
127,656 - +0.0
127,661 + -1.0
127,674 - +0.0
127,674 - +0.0
128,106 + Rru_A0109 0.24 +0.0
128,107 - Rru_A0109 0.24 +0.0
128,107 - Rru_A0109 0.24 -0.6
128,164 + Rru_A0109 0.28 +0.0
128,164 + Rru_A0109 0.28 +0.0
128,165 - Rru_A0109 0.28 -0.9
128,165 - Rru_A0109 0.28 +0.0
128,165 - Rru_A0109 0.28 +0.0
128,165 - Rru_A0109 0.28 -0.5
128,165 - Rru_A0109 0.28 +0.0
128,181 + Rru_A0109 0.29 +0.0

Or see this region's nucleotide sequence