Experiment: Vanillin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_4211 and Ga0059261_4212 are separated by 34 nucleotides Ga0059261_4212 and Ga0059261_4213 overlap by 28 nucleotides
Ga0059261_4211: Ga0059261_4211 - Dehydrogenases (flavoproteins), at 4,364,697 to 4,366,358
_4211
Ga0059261_4212: Ga0059261_4212 - TPR repeat, at 4,366,393 to 4,367,955
_4212
Ga0059261_4213: Ga0059261_4213 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 4,367,928 to 4,368,779
_4213
Position (kb)
4366
4367
4368 Strain fitness (log2 ratio)
-2
-1
0
1 at 4366.356 kb on + strand at 4366.357 kb on + strand at 4366.429 kb on + strand at 4366.540 kb on + strand at 4366.764 kb on + strand, within Ga0059261_4212 at 4366.809 kb on + strand, within Ga0059261_4212 at 4366.819 kb on + strand, within Ga0059261_4212 at 4366.819 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.821 kb on + strand, within Ga0059261_4212 at 4366.962 kb on + strand, within Ga0059261_4212 at 4366.962 kb on + strand, within Ga0059261_4212 at 4367.218 kb on + strand, within Ga0059261_4212 at 4367.269 kb on + strand, within Ga0059261_4212 at 4367.269 kb on + strand, within Ga0059261_4212 at 4367.392 kb on + strand, within Ga0059261_4212 at 4367.599 kb on + strand, within Ga0059261_4212 at 4367.599 kb on + strand at 4367.608 kb on + strand, within Ga0059261_4212 at 4367.608 kb on + strand, within Ga0059261_4212 at 4367.608 kb on + strand, within Ga0059261_4212 at 4367.608 kb on + strand, within Ga0059261_4212 at 4367.719 kb on + strand, within Ga0059261_4212 at 4367.736 kb on + strand, within Ga0059261_4212 at 4367.821 kb on + strand at 4367.821 kb on + strand at 4367.821 kb on + strand at 4367.854 kb on + strand at 4367.854 kb on + strand at 4367.878 kb on + strand at 4368.812 kb on + strand at 4368.812 kb on + strand at 4368.813 kb on - strand at 4368.815 kb on - strand at 4368.865 kb on - strand at 4368.865 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 0.25 mM remove 4,366,356 + -0.2 4,366,357 + +0.2 4,366,429 + -1.3 4,366,540 + -0.0 4,366,764 + Ga0059261_4212 0.24 -0.5 4,366,809 + Ga0059261_4212 0.27 +0.3 4,366,819 + Ga0059261_4212 0.27 -0.0 4,366,819 + Ga0059261_4212 0.27 +1.0 4,366,821 + Ga0059261_4212 0.27 +0.7 4,366,821 + Ga0059261_4212 0.27 -0.6 4,366,821 + Ga0059261_4212 0.27 +0.5 4,366,821 + Ga0059261_4212 0.27 +0.2 4,366,821 + Ga0059261_4212 0.27 -0.2 4,366,821 + Ga0059261_4212 0.27 -0.6 4,366,821 + Ga0059261_4212 0.27 -0.6 4,366,821 + Ga0059261_4212 0.27 +0.2 4,366,821 + Ga0059261_4212 0.27 +1.0 4,366,962 + Ga0059261_4212 0.36 -0.1 4,366,962 + Ga0059261_4212 0.36 +0.3 4,367,218 + Ga0059261_4212 0.53 -1.9 4,367,269 + Ga0059261_4212 0.56 -1.4 4,367,269 + Ga0059261_4212 0.56 -1.0 4,367,392 + Ga0059261_4212 0.64 +0.1 4,367,599 + Ga0059261_4212 0.77 -1.0 4,367,599 + +0.5 4,367,608 + Ga0059261_4212 0.78 +0.3 4,367,608 + Ga0059261_4212 0.78 -0.4 4,367,608 + Ga0059261_4212 0.78 -1.5 4,367,608 + Ga0059261_4212 0.78 -1.6 4,367,719 + Ga0059261_4212 0.85 -1.5 4,367,736 + Ga0059261_4212 0.86 -0.4 4,367,821 + +0.2 4,367,821 + -0.5 4,367,821 + +0.3 4,367,854 + +0.8 4,367,854 + -1.2 4,367,878 + +0.0 4,368,812 + +0.1 4,368,812 + -0.2 4,368,813 - -0.1 4,368,815 - +0.1 4,368,865 - +0.2 4,368,865 - +0.0
Or see this region's nucleotide sequence