Experiment: Vanillin 0.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_1843 and Ga0059261_1844 are separated by 6 nucleotides Ga0059261_1844 and Ga0059261_1845 are separated by 79 nucleotides Ga0059261_1845 and Ga0059261_1846 are separated by 243 nucleotides
Ga0059261_1843: Ga0059261_1843 - Protein related to penicillin acylase, at 1,950,931 to 1,953,186
_1843
Ga0059261_1844: Ga0059261_1844 - O-6-methylguanine DNA methyltransferase, at 1,953,193 to 1,953,672
_1844
Ga0059261_1845: Ga0059261_1845 - Uncharacterized protein conserved in bacteria, at 1,953,752 to 1,954,399
_1845
Ga0059261_1846: Ga0059261_1846 - Xaa-Pro aminopeptidase, at 1,954,643 to 1,956,445
_1846
Position (kb) 1953
1954
1955 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.866 kb on + strand, within Ga0059261_1843 at 1952.867 kb on - strand, within Ga0059261_1843 at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.986 kb on + strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1952.987 kb on - strand at 1953.031 kb on - strand at 1953.043 kb on + strand at 1953.044 kb on - strand at 1953.044 kb on - strand at 1953.076 kb on + strand at 1953.076 kb on + strand at 1953.076 kb on + strand at 1953.077 kb on - strand at 1953.077 kb on - strand at 1953.077 kb on - strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.097 kb on + strand at 1953.098 kb on - strand at 1953.098 kb on - strand at 1953.098 kb on - strand at 1953.184 kb on + strand at 1953.185 kb on - strand at 1953.185 kb on - strand at 1953.185 kb on - strand at 1953.185 kb on - strand at 1953.185 kb on - strand at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.377 kb on + strand, within Ga0059261_1844 at 1953.378 kb on - strand, within Ga0059261_1844 at 1953.378 kb on - strand, within Ga0059261_1844 at 1953.378 kb on - strand, within Ga0059261_1844 at 1953.378 kb on - strand, within Ga0059261_1844 at 1953.378 kb on - strand, within Ga0059261_1844 at 1953.378 kb on - strand at 1953.491 kb on + strand, within Ga0059261_1844 at 1953.492 kb on - strand, within Ga0059261_1844 at 1953.507 kb on + strand, within Ga0059261_1844 at 1953.507 kb on + strand, within Ga0059261_1844 at 1953.507 kb on + strand, within Ga0059261_1844 at 1953.507 kb on + strand, within Ga0059261_1844 at 1953.507 kb on + strand at 1953.508 kb on - strand, within Ga0059261_1844 at 1953.508 kb on - strand, within Ga0059261_1844 at 1953.690 kb on + strand at 1953.691 kb on - strand at 1953.691 kb on - strand at 1953.691 kb on - strand at 1953.705 kb on - strand at 1953.705 kb on - strand at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.940 kb on + strand, within Ga0059261_1845 at 1953.941 kb on - strand, within Ga0059261_1845 at 1953.941 kb on - strand, within Ga0059261_1845 at 1953.941 kb on - strand, within Ga0059261_1845 at 1953.941 kb on - strand, within Ga0059261_1845 at 1953.941 kb on - strand, within Ga0059261_1845 at 1953.942 kb on + strand at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.942 kb on + strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.943 kb on - strand, within Ga0059261_1845 at 1953.961 kb on - strand, within Ga0059261_1845 at 1953.973 kb on + strand, within Ga0059261_1845 at 1953.973 kb on + strand, within Ga0059261_1845 at 1953.973 kb on + strand, within Ga0059261_1845 at 1953.973 kb on + strand, within Ga0059261_1845 at 1953.973 kb on + strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1953.974 kb on - strand, within Ga0059261_1845 at 1954.038 kb on + strand, within Ga0059261_1845 at 1954.038 kb on + strand, within Ga0059261_1845 at 1954.038 kb on + strand, within Ga0059261_1845 at 1954.039 kb on - strand, within Ga0059261_1845 at 1954.066 kb on - strand, within Ga0059261_1845 at 1954.158 kb on + strand, within Ga0059261_1845 at 1954.159 kb on - strand, within Ga0059261_1845 at 1954.546 kb on - strand at 1954.598 kb on + strand at 1954.599 kb on - strand at 1954.599 kb on - strand at 1954.599 kb on - strand at 1954.599 kb on - strand at 1954.652 kb on + strand at 1954.652 kb on + strand at 1954.653 kb on - strand at 1954.653 kb on - strand at 1954.735 kb on + strand at 1954.735 kb on + strand at 1954.736 kb on - strand at 1954.736 kb on - strand at 1954.736 kb on - strand at 1954.736 kb on - strand at 1954.736 kb on - strand at 1954.737 kb on - strand at 1954.745 kb on + strand at 1954.745 kb on + strand at 1954.745 kb on + strand at 1954.746 kb on - strand at 1954.757 kb on + strand at 1954.853 kb on + strand, within Ga0059261_1846 at 1954.853 kb on + strand, within Ga0059261_1846 at 1954.855 kb on + strand, within Ga0059261_1846 at 1954.855 kb on + strand, within Ga0059261_1846 at 1954.855 kb on + strand at 1954.855 kb on + strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.856 kb on - strand, within Ga0059261_1846 at 1954.898 kb on + strand, within Ga0059261_1846 at 1954.898 kb on + strand, within Ga0059261_1846 at 1954.898 kb on + strand at 1954.898 kb on + strand, within Ga0059261_1846 at 1954.899 kb on - strand, within Ga0059261_1846 at 1954.899 kb on - strand at 1954.899 kb on - strand, within Ga0059261_1846 at 1954.899 kb on - strand, within Ga0059261_1846 at 1954.899 kb on - strand, within Ga0059261_1846 at 1954.917 kb on + strand, within Ga0059261_1846 at 1954.917 kb on + strand at 1954.917 kb on + strand, within Ga0059261_1846 at 1954.918 kb on - strand, within Ga0059261_1846 at 1954.918 kb on - strand, within Ga0059261_1846 at 1954.970 kb on + strand, within Ga0059261_1846 at 1954.970 kb on + strand, within Ga0059261_1846 at 1955.289 kb on - strand, within Ga0059261_1846 at 1955.289 kb on - strand, within Ga0059261_1846
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 0.25 mM remove 1,952,866 + Ga0059261_1843 0.86 -0.4 1,952,866 + Ga0059261_1843 0.86 +0.5 1,952,866 + Ga0059261_1843 0.86 -0.4 1,952,866 + Ga0059261_1843 0.86 +0.8 1,952,866 + Ga0059261_1843 0.86 +0.6 1,952,866 + Ga0059261_1843 0.86 -0.3 1,952,866 + Ga0059261_1843 0.86 -0.3 1,952,867 - Ga0059261_1843 0.86 +0.2 1,952,986 + +0.6 1,952,986 + +0.0 1,952,986 + +0.8 1,952,986 + +1.0 1,952,986 + -0.3 1,952,986 + +0.2 1,952,986 + -1.1 1,952,986 + -0.6 1,952,986 + -0.6 1,952,987 - +0.4 1,952,987 - +0.7 1,952,987 - -0.3 1,952,987 - -0.7 1,952,987 - +0.1 1,952,987 - +1.0 1,952,987 - -0.6 1,952,987 - -0.4 1,952,987 - -0.5 1,953,031 - -0.3 1,953,043 + -0.4 1,953,044 - +0.2 1,953,044 - -0.1 1,953,076 + -0.1 1,953,076 + +0.0 1,953,076 + +0.5 1,953,077 - +0.7 1,953,077 - +0.5 1,953,077 - +0.5 1,953,097 + +0.3 1,953,097 + +0.4 1,953,097 + -2.2 1,953,097 + -0.4 1,953,097 + -0.1 1,953,097 + +0.1 1,953,097 + -0.6 1,953,097 + -1.1 1,953,097 + -0.2 1,953,097 + +0.3 1,953,097 + +0.0 1,953,097 + +0.6 1,953,098 - -1.4 1,953,098 - +2.0 1,953,098 - +1.6 1,953,184 + -0.4 1,953,185 - -0.4 1,953,185 - -0.6 1,953,185 - +0.2 1,953,185 - -0.2 1,953,185 - +0.8 1,953,377 + Ga0059261_1844 0.38 -0.6 1,953,377 + Ga0059261_1844 0.38 +0.4 1,953,377 + Ga0059261_1844 0.38 -0.3 1,953,377 + Ga0059261_1844 0.38 +0.4 1,953,377 + Ga0059261_1844 0.38 -0.0 1,953,377 + Ga0059261_1844 0.38 +0.8 1,953,377 + Ga0059261_1844 0.38 +1.0 1,953,377 + Ga0059261_1844 0.38 -1.2 1,953,378 - Ga0059261_1844 0.39 -2.3 1,953,378 - Ga0059261_1844 0.39 +0.3 1,953,378 - Ga0059261_1844 0.39 +0.0 1,953,378 - Ga0059261_1844 0.39 +0.5 1,953,378 - Ga0059261_1844 0.39 +0.8 1,953,378 - +0.0 1,953,491 + Ga0059261_1844 0.62 +0.7 1,953,492 - Ga0059261_1844 0.62 +0.0 1,953,507 + Ga0059261_1844 0.65 -0.9 1,953,507 + Ga0059261_1844 0.65 +0.2 1,953,507 + Ga0059261_1844 0.65 -0.2 1,953,507 + Ga0059261_1844 0.65 +0.4 1,953,507 + -2.0 1,953,508 - Ga0059261_1844 0.66 -0.3 1,953,508 - Ga0059261_1844 0.66 +1.0 1,953,690 + +0.4 1,953,691 - +0.5 1,953,691 - +0.1 1,953,691 - +0.1 1,953,705 - +0.1 1,953,705 - -0.6 1,953,940 + Ga0059261_1845 0.29 -0.9 1,953,940 + Ga0059261_1845 0.29 -0.3 1,953,940 + Ga0059261_1845 0.29 +0.0 1,953,940 + Ga0059261_1845 0.29 -0.6 1,953,940 + Ga0059261_1845 0.29 -0.5 1,953,940 + Ga0059261_1845 0.29 -0.8 1,953,940 + Ga0059261_1845 0.29 +1.0 1,953,940 + Ga0059261_1845 0.29 +1.4 1,953,940 + Ga0059261_1845 0.29 +0.3 1,953,940 + Ga0059261_1845 0.29 -0.5 1,953,940 + Ga0059261_1845 0.29 -0.7 1,953,941 - Ga0059261_1845 0.29 -0.6 1,953,941 - Ga0059261_1845 0.29 -0.0 1,953,941 - Ga0059261_1845 0.29 +0.1 1,953,941 - Ga0059261_1845 0.29 +0.2 1,953,941 - Ga0059261_1845 0.29 -0.6 1,953,942 + +0.0 1,953,942 + Ga0059261_1845 0.29 -0.4 1,953,942 + Ga0059261_1845 0.29 -1.3 1,953,942 + Ga0059261_1845 0.29 -0.7 1,953,942 + Ga0059261_1845 0.29 +0.4 1,953,942 + Ga0059261_1845 0.29 +0.5 1,953,942 + Ga0059261_1845 0.29 -0.1 1,953,942 + Ga0059261_1845 0.29 +0.3 1,953,942 + Ga0059261_1845 0.29 -0.2 1,953,942 + Ga0059261_1845 0.29 -0.6 1,953,942 + Ga0059261_1845 0.29 -0.4 1,953,942 + Ga0059261_1845 0.29 +0.6 1,953,942 + Ga0059261_1845 0.29 +0.1 1,953,942 + Ga0059261_1845 0.29 +0.6 1,953,943 - Ga0059261_1845 0.29 -0.3 1,953,943 - Ga0059261_1845 0.29 +0.4 1,953,943 - Ga0059261_1845 0.29 -0.7 1,953,943 - Ga0059261_1845 0.29 +0.5 1,953,943 - Ga0059261_1845 0.29 -0.4 1,953,943 - Ga0059261_1845 0.29 +0.4 1,953,943 - Ga0059261_1845 0.29 +0.3 1,953,943 - Ga0059261_1845 0.29 -0.1 1,953,943 - Ga0059261_1845 0.29 -1.1 1,953,943 - Ga0059261_1845 0.29 +0.4 1,953,961 - Ga0059261_1845 0.32 -0.6 1,953,973 + Ga0059261_1845 0.34 +0.1 1,953,973 + Ga0059261_1845 0.34 +0.6 1,953,973 + Ga0059261_1845 0.34 +0.8 1,953,973 + Ga0059261_1845 0.34 +0.8 1,953,973 + Ga0059261_1845 0.34 +0.9 1,953,974 - Ga0059261_1845 0.34 -0.2 1,953,974 - Ga0059261_1845 0.34 +0.3 1,953,974 - Ga0059261_1845 0.34 -0.2 1,953,974 - Ga0059261_1845 0.34 +0.9 1,953,974 - Ga0059261_1845 0.34 +0.8 1,953,974 - Ga0059261_1845 0.34 +0.1 1,954,038 + Ga0059261_1845 0.44 +0.5 1,954,038 + Ga0059261_1845 0.44 +0.0 1,954,038 + Ga0059261_1845 0.44 +0.1 1,954,039 - Ga0059261_1845 0.44 -0.8 1,954,066 - Ga0059261_1845 0.48 -0.2 1,954,158 + Ga0059261_1845 0.63 -1.2 1,954,159 - Ga0059261_1845 0.63 -0.1 1,954,546 - -2.3 1,954,598 + -0.3 1,954,599 - +0.0 1,954,599 - -1.2 1,954,599 - -1.9 1,954,599 - -0.2 1,954,652 + -1.8 1,954,652 + -1.0 1,954,653 - +2.0 1,954,653 - -0.6 1,954,735 + -1.2 1,954,735 + -1.0 1,954,736 - -2.7 1,954,736 - -1.0 1,954,736 - -2.6 1,954,736 - +0.3 1,954,736 - -0.6 1,954,737 - -3.3 1,954,745 + -0.6 1,954,745 + -0.3 1,954,745 + -1.7 1,954,746 - -0.2 1,954,757 + -1.2 1,954,853 + Ga0059261_1846 0.12 -0.3 1,954,853 + Ga0059261_1846 0.12 -1.7 1,954,855 + Ga0059261_1846 0.12 -2.8 1,954,855 + Ga0059261_1846 0.12 -0.3 1,954,855 + -1.0 1,954,855 + Ga0059261_1846 0.12 -0.4 1,954,856 - Ga0059261_1846 0.12 -0.4 1,954,856 - Ga0059261_1846 0.12 -1.4 1,954,856 - Ga0059261_1846 0.12 -1.3 1,954,856 - Ga0059261_1846 0.12 -2.0 1,954,856 - Ga0059261_1846 0.12 -2.4 1,954,856 - Ga0059261_1846 0.12 -0.7 1,954,856 - +0.0 1,954,856 - Ga0059261_1846 0.12 -1.1 1,954,856 - Ga0059261_1846 0.12 +0.0 1,954,856 - Ga0059261_1846 0.12 +0.3 1,954,898 + Ga0059261_1846 0.14 -1.2 1,954,898 + Ga0059261_1846 0.14 -2.7 1,954,898 + -1.3 1,954,898 + Ga0059261_1846 0.14 -1.7 1,954,899 - Ga0059261_1846 0.14 -0.7 1,954,899 - -0.6 1,954,899 - Ga0059261_1846 0.14 +0.4 1,954,899 - Ga0059261_1846 0.14 -0.6 1,954,899 - Ga0059261_1846 0.14 -1.8 1,954,917 + Ga0059261_1846 0.15 -1.9 1,954,917 + +0.0 1,954,917 + Ga0059261_1846 0.15 -1.3 1,954,918 - Ga0059261_1846 0.15 -2.8 1,954,918 - Ga0059261_1846 0.15 +0.0 1,954,970 + Ga0059261_1846 0.18 -1.8 1,954,970 + Ga0059261_1846 0.18 +0.0 1,955,289 - Ga0059261_1846 0.36 -2.6 1,955,289 - Ga0059261_1846 0.36 -1.3
Or see this region's nucleotide sequence