Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29060 and AO356_29065 are separated by 104 nucleotides AO356_29065 and AO356_29070 are separated by 485 nucleotides
AO356_29060: AO356_29060 - hypothetical protein, at 6,756,962 to 6,757,696
_29060
AO356_29065: AO356_29065 - hypothetical protein, at 6,757,801 to 6,758,931
_29065
AO356_29070: AO356_29070 - succinate-semialdehyde dehydrogenase, at 6,759,417 to 6,760,886
_29070
Position (kb)
6757
6758
6759 Strain fitness (log2 ratio)
-1
0
1 at 6756.827 kb on + strand at 6756.968 kb on - strand at 6756.984 kb on + strand at 6757.025 kb on + strand at 6757.025 kb on + strand at 6757.025 kb on + strand at 6757.025 kb on + strand at 6757.025 kb on + strand at 6757.026 kb on - strand at 6757.026 kb on - strand at 6757.027 kb on + strand at 6757.028 kb on - strand at 6757.028 kb on - strand at 6757.028 kb on - strand at 6757.030 kb on - strand at 6757.030 kb on - strand at 6757.030 kb on - strand at 6757.083 kb on - strand, within AO356_29060 at 6757.136 kb on + strand, within AO356_29060 at 6757.137 kb on - strand, within AO356_29060 at 6757.137 kb on - strand, within AO356_29060 at 6757.187 kb on - strand, within AO356_29060 at 6757.220 kb on + strand, within AO356_29060 at 6757.220 kb on + strand, within AO356_29060 at 6757.299 kb on + strand, within AO356_29060 at 6757.299 kb on + strand, within AO356_29060 at 6757.299 kb on + strand, within AO356_29060 at 6757.475 kb on + strand, within AO356_29060 at 6757.506 kb on - strand, within AO356_29060 at 6757.522 kb on - strand, within AO356_29060 at 6757.530 kb on - strand, within AO356_29060 at 6757.806 kb on + strand at 6757.879 kb on + strand at 6757.963 kb on + strand, within AO356_29065 at 6757.963 kb on + strand, within AO356_29065 at 6757.963 kb on + strand, within AO356_29065 at 6757.964 kb on - strand, within AO356_29065 at 6757.964 kb on - strand, within AO356_29065 at 6757.966 kb on - strand, within AO356_29065 at 6758.153 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.279 kb on + strand, within AO356_29065 at 6758.280 kb on - strand, within AO356_29065 at 6758.280 kb on - strand, within AO356_29065 at 6758.280 kb on - strand, within AO356_29065 at 6758.280 kb on - strand, within AO356_29065 at 6758.280 kb on - strand, within AO356_29065 at 6758.283 kb on + strand, within AO356_29065 at 6758.283 kb on + strand, within AO356_29065 at 6758.283 kb on + strand, within AO356_29065 at 6758.284 kb on - strand, within AO356_29065 at 6758.916 kb on + strand at 6758.917 kb on - strand at 6758.946 kb on - strand at 6759.449 kb on - strand at 6759.449 kb on - strand at 6759.629 kb on - strand, within AO356_29070 at 6759.901 kb on - strand, within AO356_29070 at 6759.901 kb on - strand, within AO356_29070 at 6759.901 kb on - strand, within AO356_29070
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 6,756,827 + +0.5 6,756,968 - -0.1 6,756,984 + +1.0 6,757,025 + -0.4 6,757,025 + -0.6 6,757,025 + +0.3 6,757,025 + -0.6 6,757,025 + -0.4 6,757,026 - +0.2 6,757,026 - -0.4 6,757,027 + -0.4 6,757,028 - +0.4 6,757,028 - -0.4 6,757,028 - +0.4 6,757,030 - -0.8 6,757,030 - +0.2 6,757,030 - +0.6 6,757,083 - AO356_29060 0.16 +1.5 6,757,136 + AO356_29060 0.24 +0.4 6,757,137 - AO356_29060 0.24 +0.9 6,757,137 - AO356_29060 0.24 +0.2 6,757,187 - AO356_29060 0.31 -0.5 6,757,220 + AO356_29060 0.35 -0.5 6,757,220 + AO356_29060 0.35 +0.1 6,757,299 + AO356_29060 0.46 +0.7 6,757,299 + AO356_29060 0.46 +0.8 6,757,299 + AO356_29060 0.46 -0.8 6,757,475 + AO356_29060 0.70 -0.3 6,757,506 - AO356_29060 0.74 +0.6 6,757,522 - AO356_29060 0.76 -0.2 6,757,530 - AO356_29060 0.77 -1.1 6,757,806 + +1.0 6,757,879 + +0.8 6,757,963 + AO356_29065 0.14 +1.0 6,757,963 + AO356_29065 0.14 -0.3 6,757,963 + AO356_29065 0.14 +0.2 6,757,964 - AO356_29065 0.14 +0.2 6,757,964 - AO356_29065 0.14 +0.3 6,757,966 - AO356_29065 0.15 +0.3 6,758,153 + AO356_29065 0.31 +1.1 6,758,279 + AO356_29065 0.42 +0.6 6,758,279 + AO356_29065 0.42 -0.3 6,758,279 + AO356_29065 0.42 -0.4 6,758,279 + AO356_29065 0.42 +0.9 6,758,279 + AO356_29065 0.42 +0.1 6,758,279 + AO356_29065 0.42 +0.2 6,758,279 + AO356_29065 0.42 -0.2 6,758,280 - AO356_29065 0.42 +0.3 6,758,280 - AO356_29065 0.42 +0.5 6,758,280 - AO356_29065 0.42 +0.1 6,758,280 - AO356_29065 0.42 -0.3 6,758,280 - AO356_29065 0.42 +1.3 6,758,283 + AO356_29065 0.43 +0.5 6,758,283 + AO356_29065 0.43 +0.0 6,758,283 + AO356_29065 0.43 +1.0 6,758,284 - AO356_29065 0.43 +0.2 6,758,916 + +0.3 6,758,917 - -1.2 6,758,946 - -0.3 6,759,449 - -0.6 6,759,449 - -1.4 6,759,629 - AO356_29070 0.14 +0.5 6,759,901 - AO356_29070 0.33 -0.1 6,759,901 - AO356_29070 0.33 -0.2 6,759,901 - AO356_29070 0.33 +0.5
Or see this region's nucleotide sequence