Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_24630
Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Spectinomycin 0.0125 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,570,144 | - | AO356_24625 | 0.84 | +0.3 | |
5,570,144 | - | AO356_24625 | 0.84 | +0.8 | |
5,570,145 | + | AO356_24625 | 0.84 | -0.9 | |
5,570,145 | + | AO356_24625 | 0.84 | +1.2 | |
5,570,145 | + | AO356_24625 | 0.84 | -1.2 | |
5,570,145 | + | AO356_24625 | 0.84 | +1.2 | |
5,570,295 | + | AO356_24625 | 0.88 | -1.1 | |
5,570,364 | - | AO356_24625 | 0.90 | -0.2 | |
5,570,603 | - | -0.0 | |||
5,570,813 | + | +0.4 | |||
5,570,813 | + | -0.7 | |||
5,570,814 | - | +0.4 | |||
5,570,814 | - | -0.1 | |||
5,570,918 | + | AO356_24630 | 0.15 | -0.1 | |
5,571,308 | + | AO356_24630 | 0.46 | +0.4 | |
5,571,308 | + | AO356_24630 | 0.46 | +0.3 | |
5,571,308 | + | AO356_24630 | 0.46 | -0.2 | |
5,571,309 | - | AO356_24630 | 0.46 | -0.1 | |
5,571,309 | - | AO356_24630 | 0.46 | +0.3 | |
5,571,309 | - | AO356_24630 | 0.46 | -2.4 | |
5,571,309 | - | AO356_24630 | 0.46 | +0.8 | |
5,571,309 | - | AO356_24630 | 0.46 | +0.4 | |
5,571,504 | - | AO356_24630 | 0.62 | +0.0 | |
5,571,785 | + | AO356_24630 | 0.85 | +0.5 | |
5,571,851 | - | +0.1 | |||
5,571,851 | - | +0.2 | |||
5,572,083 | + | -0.7 | |||
5,572,322 | + | -0.1 | |||
5,572,322 | + | -0.2 | |||
5,572,323 | - | -0.5 | |||
5,572,323 | - | +0.7 | |||
5,572,331 | + | -2.9 | |||
5,572,728 | - | AO356_24640 | 0.25 | -1.6 |
Or see this region's nucleotide sequence