Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19225 and AO356_19230 are separated by 237 nucleotides AO356_19230 and AO356_19235 are separated by 103 nucleotides
AO356_19225: AO356_19225 - histidine kinase, at 4,314,787 to 4,318,257
_19225
AO356_19230: AO356_19230 - TetR family transcriptional regulator, at 4,318,495 to 4,319,034
_19230
AO356_19235: AO356_19235 - MFS transporter, at 4,319,138 to 4,320,328
_19235
Position (kb) 4318
4319
4320 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4317.551 kb on + strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.552 kb on - strand, within AO356_19225 at 4317.608 kb on + strand, within AO356_19225 at 4317.608 kb on + strand, within AO356_19225 at 4317.609 kb on - strand, within AO356_19225 at 4317.617 kb on + strand, within AO356_19225 at 4317.617 kb on + strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.618 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4317.867 kb on - strand, within AO356_19225 at 4318.040 kb on + strand at 4318.041 kb on - strand at 4318.041 kb on - strand at 4318.041 kb on - strand at 4318.044 kb on + strand at 4318.044 kb on + strand at 4318.044 kb on + strand at 4318.045 kb on - strand at 4318.045 kb on - strand at 4318.045 kb on - strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.112 kb on + strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.113 kb on - strand at 4318.133 kb on + strand at 4318.212 kb on + strand at 4318.213 kb on - strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.214 kb on + strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.215 kb on - strand at 4318.373 kb on - strand at 4318.444 kb on + strand at 4318.444 kb on + strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.445 kb on - strand at 4318.526 kb on + strand at 4318.527 kb on - strand at 4318.675 kb on + strand, within AO356_19230 at 4318.682 kb on + strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.683 kb on - strand, within AO356_19230 at 4318.723 kb on - strand, within AO356_19230 at 4318.723 kb on - strand, within AO356_19230 at 4318.754 kb on + strand, within AO356_19230 at 4318.755 kb on - strand, within AO356_19230 at 4318.877 kb on + strand, within AO356_19230 at 4318.881 kb on + strand, within AO356_19230 at 4318.881 kb on + strand, within AO356_19230 at 4319.014 kb on + strand at 4319.014 kb on + strand at 4319.015 kb on - strand at 4319.015 kb on - strand at 4319.015 kb on - strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.025 kb on + strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.026 kb on - strand at 4319.028 kb on + strand at 4319.028 kb on + strand at 4319.028 kb on + strand at 4319.046 kb on + strand at 4319.185 kb on + strand at 4319.185 kb on + strand at 4319.186 kb on - strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.231 kb on + strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.232 kb on - strand at 4319.240 kb on + strand at 4319.241 kb on - strand at 4319.241 kb on - strand at 4319.253 kb on + strand at 4319.253 kb on + strand at 4319.253 kb on + strand at 4319.254 kb on - strand at 4319.254 kb on - strand at 4319.254 kb on - strand at 4319.254 kb on - strand at 4319.294 kb on + strand, within AO356_19235 at 4319.294 kb on + strand, within AO356_19235 at 4319.294 kb on + strand, within AO356_19235 at 4319.294 kb on + strand, within AO356_19235 at 4319.294 kb on + strand, within AO356_19235 at 4319.345 kb on + strand, within AO356_19235 at 4319.345 kb on + strand, within AO356_19235 at 4319.346 kb on - strand, within AO356_19235 at 4319.391 kb on + strand, within AO356_19235 at 4319.391 kb on + strand, within AO356_19235 at 4319.392 kb on - strand, within AO356_19235 at 4319.410 kb on + strand, within AO356_19235 at 4319.410 kb on + strand, within AO356_19235 at 4319.487 kb on + strand, within AO356_19235 at 4319.487 kb on + strand, within AO356_19235 at 4319.487 kb on + strand, within AO356_19235 at 4319.488 kb on - strand, within AO356_19235 at 4319.488 kb on - strand, within AO356_19235 at 4319.488 kb on - strand, within AO356_19235 at 4319.488 kb on - strand, within AO356_19235 at 4319.539 kb on + strand, within AO356_19235 at 4319.627 kb on + strand, within AO356_19235 at 4319.627 kb on + strand, within AO356_19235 at 4319.628 kb on - strand, within AO356_19235 at 4319.667 kb on - strand, within AO356_19235 at 4319.813 kb on + strand, within AO356_19235 at 4319.921 kb on + strand, within AO356_19235 at 4319.921 kb on + strand, within AO356_19235 at 4319.921 kb on + strand, within AO356_19235 at 4319.921 kb on + strand, within AO356_19235 at 4319.921 kb on + strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.922 kb on - strand, within AO356_19235 at 4319.952 kb on + strand, within AO356_19235 at 4319.952 kb on + strand, within AO356_19235 at 4319.952 kb on + strand, within AO356_19235 at 4319.952 kb on + strand, within AO356_19235 at 4319.952 kb on + strand, within AO356_19235 at 4319.953 kb on - strand, within AO356_19235
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 4,317,551 + AO356_19225 0.80 +0.6 4,317,552 - AO356_19225 0.80 +1.5 4,317,552 - AO356_19225 0.80 +0.6 4,317,552 - AO356_19225 0.80 -0.5 4,317,552 - AO356_19225 0.80 +1.0 4,317,608 + AO356_19225 0.81 -0.0 4,317,608 + AO356_19225 0.81 +1.1 4,317,609 - AO356_19225 0.81 +1.1 4,317,617 + AO356_19225 0.82 -0.0 4,317,617 + AO356_19225 0.82 -1.0 4,317,618 - AO356_19225 0.82 -1.0 4,317,618 - AO356_19225 0.82 +0.1 4,317,618 - AO356_19225 0.82 -0.4 4,317,618 - AO356_19225 0.82 +0.1 4,317,867 - AO356_19225 0.89 -0.5 4,317,867 - AO356_19225 0.89 -0.3 4,317,867 - AO356_19225 0.89 -0.2 4,317,867 - AO356_19225 0.89 -0.6 4,318,040 + -0.2 4,318,041 - -0.3 4,318,041 - -0.0 4,318,041 - -0.3 4,318,044 + -0.7 4,318,044 + -0.2 4,318,044 + +0.4 4,318,045 - -0.1 4,318,045 - +0.6 4,318,045 - -0.5 4,318,112 + -0.3 4,318,112 + -0.4 4,318,112 + -0.2 4,318,112 + +0.3 4,318,112 + +0.4 4,318,112 + -0.3 4,318,113 - +1.0 4,318,113 - -0.6 4,318,113 - +0.5 4,318,113 - +0.0 4,318,133 + -0.9 4,318,212 + +0.2 4,318,213 - -1.1 4,318,214 + -0.0 4,318,214 + -0.4 4,318,214 + +1.4 4,318,214 + +1.2 4,318,214 + +0.0 4,318,214 + -0.6 4,318,214 + +0.7 4,318,214 + -0.5 4,318,214 + +0.1 4,318,215 - -1.0 4,318,215 - +0.3 4,318,215 - +0.6 4,318,215 - +0.3 4,318,215 - -0.3 4,318,215 - +0.6 4,318,373 - +0.3 4,318,444 + +0.6 4,318,444 + +0.2 4,318,445 - -0.7 4,318,445 - +0.0 4,318,445 - +0.1 4,318,445 - +0.4 4,318,445 - +1.0 4,318,445 - +0.8 4,318,526 + +0.0 4,318,527 - -0.3 4,318,675 + AO356_19230 0.33 +1.4 4,318,682 + AO356_19230 0.35 +0.1 4,318,683 - AO356_19230 0.35 +0.2 4,318,683 - AO356_19230 0.35 +0.8 4,318,683 - AO356_19230 0.35 +0.8 4,318,723 - AO356_19230 0.42 -0.4 4,318,723 - AO356_19230 0.42 +0.7 4,318,754 + AO356_19230 0.48 -0.2 4,318,755 - AO356_19230 0.48 +0.1 4,318,877 + AO356_19230 0.71 -0.5 4,318,881 + AO356_19230 0.71 +0.0 4,318,881 + AO356_19230 0.71 +0.3 4,319,014 + -0.2 4,319,014 + +0.3 4,319,015 - -0.1 4,319,015 - +1.6 4,319,015 - +0.7 4,319,025 + +0.3 4,319,025 + +0.3 4,319,025 + -2.3 4,319,025 + -0.2 4,319,026 - +0.1 4,319,026 - +0.3 4,319,026 - -0.1 4,319,026 - -0.2 4,319,026 - -0.9 4,319,026 - -1.5 4,319,028 + +0.4 4,319,028 + +0.9 4,319,028 + +0.1 4,319,046 + +0.2 4,319,185 + -0.8 4,319,185 + +0.0 4,319,186 - -0.4 4,319,231 + +0.9 4,319,231 + -0.2 4,319,231 + -0.2 4,319,231 + -1.0 4,319,232 - +0.1 4,319,232 - -0.5 4,319,232 - -1.3 4,319,232 - +0.0 4,319,240 + +0.2 4,319,241 - +1.9 4,319,241 - +0.2 4,319,253 + +0.3 4,319,253 + +1.1 4,319,253 + -0.0 4,319,254 - +0.1 4,319,254 - +0.4 4,319,254 - -0.1 4,319,254 - -0.2 4,319,294 + AO356_19235 0.13 +0.6 4,319,294 + AO356_19235 0.13 +0.1 4,319,294 + AO356_19235 0.13 -0.3 4,319,294 + AO356_19235 0.13 -0.1 4,319,294 + AO356_19235 0.13 +0.6 4,319,345 + AO356_19235 0.17 -1.2 4,319,345 + AO356_19235 0.17 +0.4 4,319,346 - AO356_19235 0.17 -1.1 4,319,391 + AO356_19235 0.21 +0.7 4,319,391 + AO356_19235 0.21 -0.1 4,319,392 - AO356_19235 0.21 +0.2 4,319,410 + AO356_19235 0.23 -1.0 4,319,410 + AO356_19235 0.23 -0.6 4,319,487 + AO356_19235 0.29 +0.0 4,319,487 + AO356_19235 0.29 -0.1 4,319,487 + AO356_19235 0.29 +0.1 4,319,488 - AO356_19235 0.29 -0.5 4,319,488 - AO356_19235 0.29 +1.0 4,319,488 - AO356_19235 0.29 +1.1 4,319,488 - AO356_19235 0.29 +0.1 4,319,539 + AO356_19235 0.34 +0.3 4,319,627 + AO356_19235 0.41 +0.5 4,319,627 + AO356_19235 0.41 +0.1 4,319,628 - AO356_19235 0.41 +1.0 4,319,667 - AO356_19235 0.44 +0.1 4,319,813 + AO356_19235 0.57 +0.4 4,319,921 + AO356_19235 0.66 -0.1 4,319,921 + AO356_19235 0.66 +0.3 4,319,921 + AO356_19235 0.66 +0.5 4,319,921 + AO356_19235 0.66 -0.3 4,319,921 + AO356_19235 0.66 +0.1 4,319,922 - AO356_19235 0.66 -0.7 4,319,922 - AO356_19235 0.66 -0.5 4,319,922 - AO356_19235 0.66 +0.3 4,319,922 - AO356_19235 0.66 -0.8 4,319,922 - AO356_19235 0.66 -0.1 4,319,922 - AO356_19235 0.66 +0.1 4,319,952 + AO356_19235 0.68 +0.3 4,319,952 + AO356_19235 0.68 -0.2 4,319,952 + AO356_19235 0.68 +0.4 4,319,952 + AO356_19235 0.68 -1.3 4,319,952 + AO356_19235 0.68 +0.2 4,319,953 - AO356_19235 0.68 +0.9
Or see this region's nucleotide sequence