Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_18305 and AO356_18310 are separated by 222 nucleotides AO356_18310 and AO356_18315 overlap by 4 nucleotides
AO356_18305: AO356_18305 - alkyl hydroperoxide reductase, at 4,124,529 to 4,125,131
_18305
AO356_18310: AO356_18310 - ribonuclease T, at 4,125,354 to 4,126,031
_18310
AO356_18315: AO356_18315 - dihydroorotase, at 4,126,028 to 4,127,074
_18315
Position (kb) 4125
4126
4127 Strain fitness (log2 ratio) -1
0
1 at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.422 kb on + strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.423 kb on - strand at 4124.507 kb on + strand at 4124.507 kb on + strand at 4124.508 kb on - strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.511 kb on + strand at 4124.512 kb on - strand at 4124.512 kb on - strand at 4124.536 kb on + strand at 4124.537 kb on - strand at 4124.537 kb on - strand at 4124.537 kb on - strand at 4124.542 kb on + strand at 4124.543 kb on - strand at 4124.543 kb on - strand at 4124.637 kb on + strand, within AO356_18305 at 4124.637 kb on + strand, within AO356_18305 at 4124.637 kb on + strand, within AO356_18305 at 4124.637 kb on + strand, within AO356_18305 at 4124.655 kb on + strand, within AO356_18305 at 4124.655 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.829 kb on + strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.830 kb on - strand, within AO356_18305 at 4124.871 kb on + strand, within AO356_18305 at 4124.872 kb on - strand, within AO356_18305 at 4124.872 kb on - strand, within AO356_18305 at 4124.872 kb on - strand, within AO356_18305 at 4124.975 kb on + strand, within AO356_18305 at 4125.102 kb on + strand at 4125.103 kb on - strand at 4125.129 kb on + strand at 4125.129 kb on + strand at 4125.129 kb on + strand at 4125.130 kb on - strand at 4125.130 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.233 kb on - strand at 4125.355 kb on + strand at 4125.356 kb on - strand at 4125.356 kb on - strand at 4125.356 kb on - strand at 4125.356 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 4,124,422 + -0.1 4,124,422 + +0.3 4,124,422 + -0.9 4,124,422 + -0.5 4,124,422 + -0.5 4,124,422 + +0.2 4,124,422 + -0.7 4,124,422 + +0.7 4,124,422 + +1.1 4,124,422 + -0.1 4,124,422 + +0.5 4,124,422 + +0.9 4,124,422 + -0.0 4,124,422 + +0.3 4,124,422 + +0.4 4,124,422 + -0.6 4,124,423 - -0.5 4,124,423 - +0.2 4,124,423 - +0.9 4,124,423 - +0.0 4,124,423 - +0.2 4,124,423 - +0.0 4,124,423 - -0.1 4,124,423 - +0.7 4,124,423 - +1.2 4,124,507 + +0.1 4,124,507 + +0.2 4,124,508 - +0.2 4,124,511 + -0.5 4,124,511 + -1.1 4,124,511 + +0.4 4,124,511 + +0.7 4,124,511 + +0.8 4,124,511 + -0.1 4,124,511 + +0.3 4,124,512 - +0.5 4,124,512 - +0.9 4,124,536 + +0.4 4,124,537 - -0.3 4,124,537 - -0.6 4,124,537 - +0.3 4,124,542 + -0.1 4,124,543 - -0.4 4,124,543 - +0.4 4,124,637 + AO356_18305 0.18 +0.3 4,124,637 + AO356_18305 0.18 +0.1 4,124,637 + AO356_18305 0.18 -0.7 4,124,637 + AO356_18305 0.18 -1.0 4,124,655 + AO356_18305 0.21 -1.4 4,124,655 + AO356_18305 0.21 +0.3 4,124,829 + AO356_18305 0.50 -0.4 4,124,829 + AO356_18305 0.50 -0.8 4,124,829 + AO356_18305 0.50 -1.0 4,124,829 + AO356_18305 0.50 -0.4 4,124,829 + AO356_18305 0.50 -0.3 4,124,829 + AO356_18305 0.50 -0.1 4,124,829 + AO356_18305 0.50 +0.2 4,124,829 + AO356_18305 0.50 -0.7 4,124,829 + AO356_18305 0.50 +0.8 4,124,830 - AO356_18305 0.50 +0.1 4,124,830 - AO356_18305 0.50 -0.3 4,124,830 - AO356_18305 0.50 +0.8 4,124,830 - AO356_18305 0.50 -0.5 4,124,830 - AO356_18305 0.50 -0.3 4,124,830 - AO356_18305 0.50 +0.5 4,124,871 + AO356_18305 0.57 -0.0 4,124,872 - AO356_18305 0.57 -1.1 4,124,872 - AO356_18305 0.57 +1.2 4,124,872 - AO356_18305 0.57 -0.7 4,124,975 + AO356_18305 0.74 +0.6 4,125,102 + -0.6 4,125,103 - +0.5 4,125,129 + -0.3 4,125,129 + -0.5 4,125,129 + +0.1 4,125,130 - -0.4 4,125,130 - +0.1 4,125,233 - +0.4 4,125,233 - +0.3 4,125,233 - -0.6 4,125,233 - +0.8 4,125,233 - +0.4 4,125,355 + +0.0 4,125,356 - -0.6 4,125,356 - +0.6 4,125,356 - +0.1 4,125,356 - -0.1
Or see this region's nucleotide sequence