Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_17830 and AO356_17835 are separated by 314 nucleotides AO356_17835 and AO356_17840 are separated by 284 nucleotides
AO356_17830: AO356_17830 - pyruvate kinase, at 4,023,032 to 4,024,483
_17830
AO356_17835: AO356_17835 - hypothetical protein, at 4,024,798 to 4,025,169
_17835
AO356_17840: AO356_17840 - pilus assembly protein PilZ, at 4,025,454 to 4,025,813
_17840
Position (kb)
4024
4025
4026 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4023.841 kb on + strand, within AO356_17830 at 4023.873 kb on + strand, within AO356_17830 at 4023.916 kb on - strand, within AO356_17830 at 4023.916 kb on - strand, within AO356_17830 at 4024.435 kb on + strand at 4024.518 kb on + strand at 4024.518 kb on + strand at 4024.518 kb on + strand at 4024.519 kb on - strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.521 kb on + strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.522 kb on - strand at 4024.536 kb on + strand at 4024.536 kb on + strand at 4024.536 kb on + strand at 4024.537 kb on - strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.549 kb on + strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.550 kb on - strand at 4024.556 kb on + strand at 4024.607 kb on + strand at 4024.607 kb on + strand at 4024.608 kb on - strand at 4024.636 kb on - strand at 4024.746 kb on + strand at 4024.770 kb on + strand at 4024.882 kb on + strand, within AO356_17835 at 4024.882 kb on + strand, within AO356_17835 at 4024.883 kb on - strand, within AO356_17835 at 4024.883 kb on - strand, within AO356_17835 at 4024.883 kb on - strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.891 kb on + strand, within AO356_17835 at 4024.892 kb on - strand, within AO356_17835 at 4024.963 kb on + strand, within AO356_17835 at 4024.963 kb on + strand, within AO356_17835 at 4024.964 kb on - strand, within AO356_17835 at 4025.041 kb on + strand, within AO356_17835 at 4025.041 kb on + strand, within AO356_17835 at 4025.041 kb on + strand, within AO356_17835 at 4025.042 kb on - strand, within AO356_17835 at 4025.063 kb on - strand, within AO356_17835 at 4025.077 kb on + strand, within AO356_17835 at 4025.078 kb on - strand, within AO356_17835 at 4025.078 kb on - strand, within AO356_17835 at 4025.078 kb on - strand, within AO356_17835 at 4025.230 kb on - strand at 4025.238 kb on + strand at 4025.239 kb on - strand at 4025.239 kb on - strand at 4025.239 kb on - strand at 4025.272 kb on + strand at 4025.272 kb on + strand at 4025.272 kb on + strand at 4025.272 kb on + strand at 4025.272 kb on + strand at 4025.272 kb on + strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.273 kb on - strand at 4025.278 kb on + strand at 4025.279 kb on - strand at 4025.279 kb on - strand at 4025.279 kb on - strand at 4025.291 kb on + strand at 4025.292 kb on - strand at 4025.292 kb on - strand at 4025.297 kb on + strand at 4025.297 kb on + strand at 4025.297 kb on + strand at 4025.297 kb on + strand at 4025.297 kb on + strand at 4025.297 kb on + strand at 4025.298 kb on - strand at 4025.298 kb on - strand at 4025.298 kb on - strand at 4025.305 kb on + strand at 4025.305 kb on + strand at 4025.306 kb on - strand at 4025.306 kb on - strand at 4025.311 kb on + strand at 4025.312 kb on - strand at 4025.336 kb on + strand at 4025.354 kb on + strand at 4025.416 kb on - strand at 4025.424 kb on + strand at 4025.424 kb on + strand at 4025.425 kb on - strand at 4025.425 kb on - strand at 4025.446 kb on + strand at 4025.457 kb on + strand at 4025.457 kb on + strand at 4025.457 kb on + strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.458 kb on - strand at 4025.494 kb on - strand, within AO356_17840 at 4025.516 kb on + strand, within AO356_17840 at 4025.778 kb on + strand at 4025.779 kb on - strand at 4025.790 kb on + strand at 4025.837 kb on - strand at 4025.837 kb on - strand at 4025.837 kb on - strand at 4025.837 kb on - strand at 4025.837 kb on - strand at 4025.939 kb on + strand at 4025.940 kb on - strand at 4025.993 kb on + strand at 4025.993 kb on + strand at 4026.040 kb on - strand at 4026.040 kb on - strand at 4026.073 kb on + strand at 4026.073 kb on + strand at 4026.074 kb on - strand at 4026.074 kb on - strand at 4026.084 kb on + strand at 4026.106 kb on + strand at 4026.107 kb on - strand at 4026.118 kb on + strand at 4026.119 kb on - strand at 4026.119 kb on - strand at 4026.119 kb on - strand at 4026.143 kb on + strand at 4026.144 kb on - strand at 4026.144 kb on - strand at 4026.146 kb on + strand at 4026.146 kb on + strand at 4026.146 kb on + strand at 4026.146 kb on + strand at 4026.166 kb on + strand at 4026.166 kb on + strand at 4026.167 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 4,023,841 + AO356_17830 0.56 -0.3 4,023,873 + AO356_17830 0.58 -1.3 4,023,916 - AO356_17830 0.61 +0.1 4,023,916 - AO356_17830 0.61 -0.8 4,024,435 + +0.4 4,024,518 + -1.5 4,024,518 + +0.9 4,024,518 + -0.6 4,024,519 - -0.4 4,024,521 + +0.1 4,024,521 + -1.3 4,024,521 + -0.1 4,024,521 + -1.5 4,024,521 + +0.5 4,024,521 + +0.4 4,024,521 + -0.0 4,024,521 + -0.4 4,024,521 + -0.2 4,024,521 + -1.6 4,024,521 + -3.2 4,024,522 - +0.9 4,024,522 - +1.1 4,024,522 - -0.7 4,024,522 - -1.9 4,024,522 - -0.0 4,024,522 - +0.4 4,024,522 - -0.2 4,024,536 + -0.2 4,024,536 + +0.7 4,024,536 + -0.6 4,024,537 - -0.6 4,024,549 + +0.4 4,024,549 + -0.1 4,024,549 + -0.1 4,024,549 + +1.1 4,024,549 + -1.1 4,024,549 + -1.8 4,024,549 + +0.6 4,024,550 - +0.7 4,024,550 - +0.1 4,024,550 - +0.2 4,024,550 - +0.2 4,024,550 - +0.1 4,024,550 - -0.0 4,024,550 - +0.1 4,024,556 + -0.1 4,024,607 + -0.2 4,024,607 + -0.7 4,024,608 - +0.2 4,024,636 - -0.6 4,024,746 + -0.3 4,024,770 + -0.2 4,024,882 + AO356_17835 0.23 -0.3 4,024,882 + AO356_17835 0.23 +0.3 4,024,883 - AO356_17835 0.23 +0.4 4,024,883 - AO356_17835 0.23 +1.0 4,024,883 - AO356_17835 0.23 +0.5 4,024,891 + AO356_17835 0.25 +0.7 4,024,891 + AO356_17835 0.25 -0.4 4,024,891 + AO356_17835 0.25 +0.6 4,024,891 + AO356_17835 0.25 +0.7 4,024,891 + AO356_17835 0.25 -0.6 4,024,891 + AO356_17835 0.25 +0.2 4,024,891 + AO356_17835 0.25 -0.7 4,024,892 - AO356_17835 0.25 -0.3 4,024,963 + AO356_17835 0.44 -0.5 4,024,963 + AO356_17835 0.44 +0.1 4,024,964 - AO356_17835 0.45 +1.3 4,025,041 + AO356_17835 0.65 -0.2 4,025,041 + AO356_17835 0.65 +1.5 4,025,041 + AO356_17835 0.65 -0.3 4,025,042 - AO356_17835 0.66 +0.3 4,025,063 - AO356_17835 0.71 -1.8 4,025,077 + AO356_17835 0.75 -0.2 4,025,078 - AO356_17835 0.75 -0.1 4,025,078 - AO356_17835 0.75 +0.1 4,025,078 - AO356_17835 0.75 +0.0 4,025,230 - +0.6 4,025,238 + -0.1 4,025,239 - +0.1 4,025,239 - +0.6 4,025,239 - +0.1 4,025,272 + -0.1 4,025,272 + +0.2 4,025,272 + +0.3 4,025,272 + -1.0 4,025,272 + -0.1 4,025,272 + -0.7 4,025,273 - -0.1 4,025,273 - -0.5 4,025,273 - -0.1 4,025,273 - -0.3 4,025,273 - +1.8 4,025,273 - -1.3 4,025,273 - +0.3 4,025,278 + +0.4 4,025,279 - +0.2 4,025,279 - +0.8 4,025,279 - +0.1 4,025,291 + +0.7 4,025,292 - +0.1 4,025,292 - -0.5 4,025,297 + +1.0 4,025,297 + -0.0 4,025,297 + +0.3 4,025,297 + +0.3 4,025,297 + -0.5 4,025,297 + +1.5 4,025,298 - +0.3 4,025,298 - +0.5 4,025,298 - -0.8 4,025,305 + -0.6 4,025,305 + -0.6 4,025,306 - +0.0 4,025,306 - -1.0 4,025,311 + -0.8 4,025,312 - +0.3 4,025,336 + +1.4 4,025,354 + +0.6 4,025,416 - -0.5 4,025,424 + -1.6 4,025,424 + -0.3 4,025,425 - +0.0 4,025,425 - -0.5 4,025,446 + +2.2 4,025,457 + +0.1 4,025,457 + -0.2 4,025,457 + +0.2 4,025,458 - +0.1 4,025,458 - -0.3 4,025,458 - +0.2 4,025,458 - -0.7 4,025,458 - -0.2 4,025,458 - +0.6 4,025,458 - -0.2 4,025,494 - AO356_17840 0.11 +0.2 4,025,516 + AO356_17840 0.17 +0.5 4,025,778 + +0.8 4,025,779 - +0.3 4,025,790 + -0.4 4,025,837 - +0.2 4,025,837 - -0.2 4,025,837 - +0.5 4,025,837 - +0.4 4,025,837 - +0.0 4,025,939 + -0.7 4,025,940 - -0.8 4,025,993 + +0.5 4,025,993 + -0.1 4,026,040 - -0.3 4,026,040 - +0.1 4,026,073 + +0.0 4,026,073 + +0.4 4,026,074 - +0.9 4,026,074 - +0.2 4,026,084 + -0.7 4,026,106 + +0.3 4,026,107 - +0.2 4,026,118 + +0.3 4,026,119 - +0.6 4,026,119 - -0.1 4,026,119 - -0.3 4,026,143 + -1.3 4,026,144 - -0.5 4,026,144 - +0.1 4,026,146 + +1.4 4,026,146 + +0.0 4,026,146 + +0.5 4,026,146 + +0.5 4,026,166 + +0.4 4,026,166 + +0.6 4,026,167 - +0.2
Or see this region's nucleotide sequence