Experiment: Spectinomycin 0.0125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_14890 and AO356_14895 are separated by 1 nucleotides AO356_14895 and AO356_14900 are separated by 157 nucleotides AO356_14900 and AO356_14905 are separated by 120 nucleotides
AO356_14890: AO356_14890 - peptide ABC transporter permease, at 3,372,106 to 3,373,371
_14890
AO356_14895: AO356_14895 - methionine ABC transporter ATP-binding protein, at 3,373,373 to 3,374,083
_14895
AO356_14900: AO356_14900 - zinc-binding protein, at 3,374,241 to 3,374,828
_14900
AO356_14905: AO356_14905 - hypothetical protein, at 3,374,949 to 3,375,299
_14905
Position (kb)
3373
3374
3375 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3372.544 kb on + strand, within AO356_14890 at 3372.544 kb on + strand, within AO356_14890 at 3372.545 kb on - strand, within AO356_14890 at 3372.675 kb on + strand, within AO356_14890 at 3372.675 kb on + strand, within AO356_14890 at 3372.899 kb on + strand, within AO356_14890 at 3372.899 kb on + strand, within AO356_14890 at 3372.899 kb on + strand, within AO356_14890 at 3372.899 kb on + strand, within AO356_14890 at 3372.900 kb on - strand, within AO356_14890 at 3372.900 kb on - strand, within AO356_14890 at 3372.900 kb on - strand, within AO356_14890 at 3372.900 kb on - strand, within AO356_14890 at 3372.900 kb on - strand, within AO356_14890 at 3373.005 kb on - strand, within AO356_14890 at 3373.016 kb on + strand, within AO356_14890 at 3373.016 kb on + strand, within AO356_14890 at 3373.016 kb on + strand, within AO356_14890 at 3373.016 kb on + strand, within AO356_14890 at 3373.016 kb on - strand, within AO356_14890 at 3373.017 kb on - strand, within AO356_14890 at 3373.017 kb on - strand, within AO356_14890 at 3373.166 kb on + strand, within AO356_14890 at 3373.166 kb on + strand, within AO356_14890 at 3373.167 kb on - strand, within AO356_14890 at 3373.167 kb on - strand, within AO356_14890 at 3373.354 kb on + strand at 3373.354 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.367 kb on + strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.368 kb on - strand at 3373.533 kb on + strand, within AO356_14895 at 3373.534 kb on - strand, within AO356_14895 at 3373.534 kb on - strand, within AO356_14895 at 3373.534 kb on - strand, within AO356_14895 at 3373.821 kb on + strand, within AO356_14895 at 3373.821 kb on + strand, within AO356_14895 at 3373.821 kb on + strand, within AO356_14895 at 3373.822 kb on - strand, within AO356_14895 at 3373.937 kb on + strand, within AO356_14895 at 3373.937 kb on + strand, within AO356_14895 at 3373.938 kb on - strand, within AO356_14895 at 3374.310 kb on + strand, within AO356_14900 at 3374.310 kb on + strand, within AO356_14900 at 3374.401 kb on + strand, within AO356_14900 at 3374.401 kb on + strand, within AO356_14900 at 3374.401 kb on + strand, within AO356_14900 at 3374.577 kb on + strand, within AO356_14900 at 3374.852 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.923 kb on + strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.924 kb on - strand at 3374.932 kb on + strand at 3374.932 kb on + strand at 3374.932 kb on + strand at 3374.933 kb on - strand at 3374.933 kb on - strand at 3374.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml remove 3,372,544 + AO356_14890 0.35 +0.1 3,372,544 + AO356_14890 0.35 +0.7 3,372,545 - AO356_14890 0.35 -0.2 3,372,675 + AO356_14890 0.45 +0.3 3,372,675 + AO356_14890 0.45 -1.1 3,372,899 + AO356_14890 0.63 +0.6 3,372,899 + AO356_14890 0.63 +0.6 3,372,899 + AO356_14890 0.63 -0.5 3,372,899 + AO356_14890 0.63 -1.2 3,372,900 - AO356_14890 0.63 +0.0 3,372,900 - AO356_14890 0.63 -0.3 3,372,900 - AO356_14890 0.63 +0.3 3,372,900 - AO356_14890 0.63 -0.1 3,372,900 - AO356_14890 0.63 +1.3 3,373,005 - AO356_14890 0.71 -0.9 3,373,016 + AO356_14890 0.72 -0.1 3,373,016 + AO356_14890 0.72 -0.3 3,373,016 + AO356_14890 0.72 +0.1 3,373,016 + AO356_14890 0.72 -0.4 3,373,016 - AO356_14890 0.72 +0.6 3,373,017 - AO356_14890 0.72 +0.3 3,373,017 - AO356_14890 0.72 -0.0 3,373,166 + AO356_14890 0.84 +0.2 3,373,166 + AO356_14890 0.84 -0.4 3,373,167 - AO356_14890 0.84 +0.1 3,373,167 - AO356_14890 0.84 +0.2 3,373,354 + +0.4 3,373,354 + -0.3 3,373,367 + -0.3 3,373,367 + +0.6 3,373,367 + +1.0 3,373,367 + +0.3 3,373,367 + +0.4 3,373,367 + +0.2 3,373,367 + +0.2 3,373,367 + +0.6 3,373,367 + +0.7 3,373,367 + +0.3 3,373,367 + -0.0 3,373,367 + +0.2 3,373,367 + -0.3 3,373,367 + -1.0 3,373,367 + -0.4 3,373,368 - -0.5 3,373,368 - -0.4 3,373,368 - +0.3 3,373,368 - +0.3 3,373,368 - +0.0 3,373,368 - +0.5 3,373,368 - -0.0 3,373,368 - +0.1 3,373,533 + AO356_14895 0.23 +0.4 3,373,534 - AO356_14895 0.23 +1.9 3,373,534 - AO356_14895 0.23 -0.4 3,373,534 - AO356_14895 0.23 +0.4 3,373,821 + AO356_14895 0.63 +1.1 3,373,821 + AO356_14895 0.63 +0.7 3,373,821 + AO356_14895 0.63 +0.1 3,373,822 - AO356_14895 0.63 -0.8 3,373,937 + AO356_14895 0.79 +0.1 3,373,937 + AO356_14895 0.79 +1.1 3,373,938 - AO356_14895 0.79 -0.3 3,374,310 + AO356_14900 0.12 +0.4 3,374,310 + AO356_14900 0.12 +0.0 3,374,401 + AO356_14900 0.27 -0.3 3,374,401 + AO356_14900 0.27 +0.9 3,374,401 + AO356_14900 0.27 +0.9 3,374,577 + AO356_14900 0.57 +0.4 3,374,852 + +1.6 3,374,923 + +0.6 3,374,923 + +0.7 3,374,923 + -0.9 3,374,923 + +0.3 3,374,923 + -2.1 3,374,923 + +0.4 3,374,923 + +0.8 3,374,923 + +0.2 3,374,923 + -0.1 3,374,923 + +0.4 3,374,923 + +0.3 3,374,923 + +0.1 3,374,923 + +0.5 3,374,923 + +0.1 3,374,923 + -0.9 3,374,923 + +0.1 3,374,923 + +0.3 3,374,923 + -0.2 3,374,923 + +0.2 3,374,923 + +0.4 3,374,923 + +0.1 3,374,924 - +0.8 3,374,924 - +0.1 3,374,924 - -0.5 3,374,924 - -0.0 3,374,924 - +1.2 3,374,924 - +1.1 3,374,924 - -0.6 3,374,924 - +0.4 3,374,924 - +0.6 3,374,924 - -0.5 3,374,924 - +0.2 3,374,932 + +0.8 3,374,932 + +0.3 3,374,932 + -0.4 3,374,933 - +0.1 3,374,933 - +0.1 3,374,933 - -0.6
Or see this region's nucleotide sequence