Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_05380

Experiment: Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_05370 and AO356_05375 are separated by 61 nucleotidesAO356_05375 and AO356_05380 are separated by 73 nucleotidesAO356_05380 and AO356_05385 are separated by 121 nucleotides AO356_05370: AO356_05370 - short-chain dehydrogenase, at 1,207,143 to 1,207,742 _05370 AO356_05375: AO356_05375 - hypothetical protein, at 1,207,804 to 1,208,478 _05375 AO356_05380: AO356_05380 - hypothetical protein, at 1,208,552 to 1,210,165 _05380 AO356_05385: AO356_05385 - cysteine synthase, at 1,210,287 to 1,211,381 _05385 Position (kb) 1208 1209 1210 1211Strain fitness (log2 ratio) -2 -1 0 1 2at 1207.632 kb on + strand, within AO356_05370at 1207.632 kb on + strand, within AO356_05370at 1207.632 kb on + strand, within AO356_05370at 1207.633 kb on - strand, within AO356_05370at 1207.641 kb on + strand, within AO356_05370at 1207.642 kb on - strand, within AO356_05370at 1207.642 kb on - strand, within AO356_05370at 1207.711 kb on + strandat 1207.712 kb on - strandat 1207.712 kb on - strandat 1207.772 kb on + strandat 1207.772 kb on + strandat 1207.773 kb on - strandat 1207.773 kb on - strandat 1207.978 kb on + strand, within AO356_05375at 1207.979 kb on - strand, within AO356_05375at 1207.979 kb on - strand, within AO356_05375at 1207.979 kb on - strand, within AO356_05375at 1207.979 kb on - strand, within AO356_05375at 1208.063 kb on + strand, within AO356_05375at 1208.063 kb on + strand, within AO356_05375at 1208.063 kb on + strand, within AO356_05375at 1208.064 kb on - strand, within AO356_05375at 1208.064 kb on - strand, within AO356_05375at 1208.064 kb on - strand, within AO356_05375at 1208.064 kb on - strand, within AO356_05375at 1208.281 kb on + strand, within AO356_05375at 1208.452 kb on + strandat 1208.495 kb on + strandat 1208.495 kb on + strandat 1208.496 kb on - strandat 1208.497 kb on + strandat 1208.498 kb on - strandat 1208.556 kb on + strandat 1208.556 kb on + strandat 1208.678 kb on + strandat 1208.678 kb on + strandat 1208.678 kb on + strandat 1208.678 kb on + strandat 1208.717 kb on + strand, within AO356_05380at 1208.717 kb on + strand, within AO356_05380at 1208.718 kb on - strand, within AO356_05380at 1208.718 kb on - strand, within AO356_05380at 1208.718 kb on - strand, within AO356_05380at 1208.718 kb on - strand, within AO356_05380at 1208.780 kb on - strand, within AO356_05380at 1208.807 kb on + strand, within AO356_05380at 1208.807 kb on + strand, within AO356_05380at 1208.807 kb on + strand, within AO356_05380at 1208.808 kb on - strand, within AO356_05380at 1208.808 kb on - strand, within AO356_05380at 1208.808 kb on - strand, within AO356_05380at 1208.956 kb on + strand, within AO356_05380at 1208.956 kb on + strand, within AO356_05380at 1208.957 kb on - strand, within AO356_05380at 1208.957 kb on - strand, within AO356_05380at 1209.059 kb on + strand, within AO356_05380at 1209.060 kb on - strand, within AO356_05380at 1209.143 kb on + strand, within AO356_05380at 1209.143 kb on + strand, within AO356_05380at 1209.143 kb on + strand, within AO356_05380at 1209.144 kb on - strand, within AO356_05380at 1209.144 kb on - strand, within AO356_05380at 1209.144 kb on - strand, within AO356_05380at 1209.231 kb on + strand, within AO356_05380at 1209.231 kb on + strand, within AO356_05380at 1209.232 kb on - strand, within AO356_05380at 1209.232 kb on - strand, within AO356_05380at 1209.232 kb on - strand, within AO356_05380at 1209.232 kb on - strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.389 kb on + strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.390 kb on - strand, within AO356_05380at 1209.391 kb on + strand, within AO356_05380at 1209.391 kb on + strand, within AO356_05380at 1209.470 kb on + strand, within AO356_05380at 1209.470 kb on + strand, within AO356_05380at 1209.470 kb on + strand, within AO356_05380at 1209.471 kb on - strand, within AO356_05380at 1209.504 kb on - strand, within AO356_05380at 1209.542 kb on + strand, within AO356_05380at 1209.542 kb on + strand, within AO356_05380at 1209.542 kb on + strand, within AO356_05380at 1209.542 kb on + strand, within AO356_05380at 1209.543 kb on - strand, within AO356_05380at 1209.626 kb on + strand, within AO356_05380at 1209.627 kb on - strand, within AO356_05380at 1209.767 kb on + strand, within AO356_05380at 1209.767 kb on + strand, within AO356_05380at 1209.768 kb on - strand, within AO356_05380at 1209.768 kb on - strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.845 kb on + strand, within AO356_05380at 1209.846 kb on - strand, within AO356_05380at 1209.846 kb on - strand, within AO356_05380at 1210.293 kb on - strandat 1210.375 kb on + strandat 1210.376 kb on - strandat 1210.405 kb on + strand, within AO356_05385at 1210.406 kb on - strand, within AO356_05385at 1210.406 kb on - strand, within AO356_05385at 1210.406 kb on - strand, within AO356_05385at 1210.406 kb on - strand, within AO356_05385at 1210.406 kb on - strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.408 kb on + strand, within AO356_05385at 1210.409 kb on - strand, within AO356_05385at 1210.409 kb on - strand, within AO356_05385at 1210.409 kb on - strand, within AO356_05385at 1210.409 kb on - strand, within AO356_05385at 1210.409 kb on - strand, within AO356_05385at 1210.561 kb on + strand, within AO356_05385at 1210.561 kb on + strand, within AO356_05385at 1210.562 kb on - strand, within AO356_05385at 1210.562 kb on - strand, within AO356_05385at 1210.562 kb on - strand, within AO356_05385at 1210.709 kb on - strand, within AO356_05385at 1210.711 kb on + strand, within AO356_05385at 1210.711 kb on + strand, within AO356_05385at 1210.712 kb on - strand, within AO356_05385at 1210.712 kb on - strand, within AO356_05385at 1210.712 kb on - strand, within AO356_05385at 1210.780 kb on + strand, within AO356_05385at 1210.780 kb on + strand, within AO356_05385at 1210.780 kb on + strand, within AO356_05385at 1210.780 kb on + strand, within AO356_05385at 1210.781 kb on - strand, within AO356_05385at 1210.781 kb on - strand, within AO356_05385at 1210.781 kb on - strand, within AO356_05385at 1210.924 kb on + strand, within AO356_05385at 1210.924 kb on + strand, within AO356_05385at 1210.924 kb on + strand, within AO356_05385at 1210.924 kb on + strand, within AO356_05385at 1210.925 kb on - strand, within AO356_05385at 1210.925 kb on - strand, within AO356_05385at 1210.925 kb on - strand, within AO356_05385at 1210.925 kb on - strand, within AO356_05385at 1210.925 kb on - strand, within AO356_05385at 1210.984 kb on + strand, within AO356_05385at 1210.985 kb on - strand, within AO356_05385at 1210.985 kb on - strand, within AO356_05385at 1210.985 kb on - strand, within AO356_05385at 1210.985 kb on - strand, within AO356_05385at 1210.994 kb on + strand, within AO356_05385at 1210.994 kb on + strand, within AO356_05385at 1211.026 kb on + strand, within AO356_05385at 1211.027 kb on - strand, within AO356_05385at 1211.027 kb on - strand, within AO356_05385at 1211.027 kb on - strand, within AO356_05385at 1211.110 kb on + strand, within AO356_05385at 1211.110 kb on + strand, within AO356_05385at 1211.111 kb on - strand, within AO356_05385at 1211.111 kb on - strand, within AO356_05385at 1211.111 kb on - strand, within AO356_05385at 1211.111 kb on - strand, within AO356_05385

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
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1,207,632 + AO356_05370 0.81 +0.0
1,207,632 + AO356_05370 0.81 -0.4
1,207,632 + AO356_05370 0.81 -0.7
1,207,633 - AO356_05370 0.82 +0.1
1,207,641 + AO356_05370 0.83 +0.1
1,207,642 - AO356_05370 0.83 -0.2
1,207,642 - AO356_05370 0.83 -2.6
1,207,711 + -0.9
1,207,712 - +0.8
1,207,712 - -1.3
1,207,772 + -0.1
1,207,772 + +0.1
1,207,773 - +0.7
1,207,773 - +0.1
1,207,978 + AO356_05375 0.26 -0.8
1,207,979 - AO356_05375 0.26 -0.7
1,207,979 - AO356_05375 0.26 -0.9
1,207,979 - AO356_05375 0.26 +0.2
1,207,979 - AO356_05375 0.26 +0.1
1,208,063 + AO356_05375 0.38 +0.2
1,208,063 + AO356_05375 0.38 -0.3
1,208,063 + AO356_05375 0.38 +0.5
1,208,064 - AO356_05375 0.39 +0.5
1,208,064 - AO356_05375 0.39 -0.6
1,208,064 - AO356_05375 0.39 +0.5
1,208,064 - AO356_05375 0.39 -0.1
1,208,281 + AO356_05375 0.71 -0.2
1,208,452 + +0.0
1,208,495 + +0.2
1,208,495 + +0.7
1,208,496 - -0.2
1,208,497 + +0.1
1,208,498 - -0.2
1,208,556 + +0.2
1,208,556 + +0.9
1,208,678 + +0.0
1,208,678 + -0.4
1,208,678 + +0.8
1,208,678 + -0.4
1,208,717 + AO356_05380 0.10 +1.6
1,208,717 + AO356_05380 0.10 -0.1
1,208,718 - AO356_05380 0.10 +1.0
1,208,718 - AO356_05380 0.10 +1.1
1,208,718 - AO356_05380 0.10 +0.0
1,208,718 - AO356_05380 0.10 -0.1
1,208,780 - AO356_05380 0.14 -0.4
1,208,807 + AO356_05380 0.16 -1.8
1,208,807 + AO356_05380 0.16 +1.0
1,208,807 + AO356_05380 0.16 -0.5
1,208,808 - AO356_05380 0.16 -0.6
1,208,808 - AO356_05380 0.16 -0.6
1,208,808 - AO356_05380 0.16 +0.1
1,208,956 + AO356_05380 0.25 +0.7
1,208,956 + AO356_05380 0.25 +1.0
1,208,957 - AO356_05380 0.25 +0.1
1,208,957 - AO356_05380 0.25 +0.0
1,209,059 + AO356_05380 0.31 +0.5
1,209,060 - AO356_05380 0.31 -0.4
1,209,143 + AO356_05380 0.37 +0.4
1,209,143 + AO356_05380 0.37 -0.2
1,209,143 + AO356_05380 0.37 +0.5
1,209,144 - AO356_05380 0.37 -0.5
1,209,144 - AO356_05380 0.37 -0.1
1,209,144 - AO356_05380 0.37 -0.2
1,209,231 + AO356_05380 0.42 -0.0
1,209,231 + AO356_05380 0.42 +0.3
1,209,232 - AO356_05380 0.42 +0.4
1,209,232 - AO356_05380 0.42 -0.4
1,209,232 - AO356_05380 0.42 +0.6
1,209,232 - AO356_05380 0.42 +0.3
1,209,389 + AO356_05380 0.52 +0.4
1,209,389 + AO356_05380 0.52 -0.0
1,209,389 + AO356_05380 0.52 +1.4
1,209,389 + AO356_05380 0.52 +0.3
1,209,389 + AO356_05380 0.52 -0.4
1,209,389 + AO356_05380 0.52 +0.5
1,209,389 + AO356_05380 0.52 -0.4
1,209,390 - AO356_05380 0.52 -0.4
1,209,390 - AO356_05380 0.52 +0.3
1,209,390 - AO356_05380 0.52 +2.0
1,209,390 - AO356_05380 0.52 -0.7
1,209,390 - AO356_05380 0.52 +1.3
1,209,390 - AO356_05380 0.52 +0.0
1,209,390 - AO356_05380 0.52 +0.6
1,209,390 - AO356_05380 0.52 +0.6
1,209,390 - AO356_05380 0.52 -0.2
1,209,390 - AO356_05380 0.52 -0.4
1,209,390 - AO356_05380 0.52 +0.3
1,209,390 - AO356_05380 0.52 -0.2
1,209,391 + AO356_05380 0.52 +0.1
1,209,391 + AO356_05380 0.52 +0.3
1,209,470 + AO356_05380 0.57 -0.1
1,209,470 + AO356_05380 0.57 -1.3
1,209,470 + AO356_05380 0.57 -0.7
1,209,471 - AO356_05380 0.57 -1.9
1,209,504 - AO356_05380 0.59 -0.3
1,209,542 + AO356_05380 0.61 -0.5
1,209,542 + AO356_05380 0.61 +0.8
1,209,542 + AO356_05380 0.61 +1.1
1,209,542 + AO356_05380 0.61 +0.6
1,209,543 - AO356_05380 0.61 +0.1
1,209,626 + AO356_05380 0.67 +0.0
1,209,627 - AO356_05380 0.67 +0.2
1,209,767 + AO356_05380 0.75 -0.4
1,209,767 + AO356_05380 0.75 -0.8
1,209,768 - AO356_05380 0.75 +0.5
1,209,768 - AO356_05380 0.75 +0.3
1,209,845 + AO356_05380 0.80 -0.1
1,209,845 + AO356_05380 0.80 -1.6
1,209,845 + AO356_05380 0.80 -0.3
1,209,845 + AO356_05380 0.80 -0.6
1,209,845 + AO356_05380 0.80 -0.2
1,209,845 + AO356_05380 0.80 +0.5
1,209,846 - AO356_05380 0.80 +0.5
1,209,846 - AO356_05380 0.80 -1.1
1,210,293 - +0.2
1,210,375 + +0.6
1,210,376 - -0.5
1,210,405 + AO356_05385 0.11 +0.0
1,210,406 - AO356_05385 0.11 -0.3
1,210,406 - AO356_05385 0.11 -1.0
1,210,406 - AO356_05385 0.11 -0.2
1,210,406 - AO356_05385 0.11 +0.1
1,210,406 - AO356_05385 0.11 +0.5
1,210,408 + AO356_05385 0.11 +0.1
1,210,408 + AO356_05385 0.11 -0.4
1,210,408 + AO356_05385 0.11 +0.2
1,210,408 + AO356_05385 0.11 -0.3
1,210,408 + AO356_05385 0.11 -0.4
1,210,408 + AO356_05385 0.11 -0.1
1,210,409 - AO356_05385 0.11 -0.8
1,210,409 - AO356_05385 0.11 +0.8
1,210,409 - AO356_05385 0.11 -0.4
1,210,409 - AO356_05385 0.11 -0.3
1,210,409 - AO356_05385 0.11 +0.4
1,210,561 + AO356_05385 0.25 +0.3
1,210,561 + AO356_05385 0.25 -1.1
1,210,562 - AO356_05385 0.25 +1.3
1,210,562 - AO356_05385 0.25 +1.1
1,210,562 - AO356_05385 0.25 -0.6
1,210,709 - AO356_05385 0.39 +0.4
1,210,711 + AO356_05385 0.39 +0.6
1,210,711 + AO356_05385 0.39 +0.0
1,210,712 - AO356_05385 0.39 +0.7
1,210,712 - AO356_05385 0.39 +0.8
1,210,712 - AO356_05385 0.39 +0.6
1,210,780 + AO356_05385 0.45 +0.1
1,210,780 + AO356_05385 0.45 -0.2
1,210,780 + AO356_05385 0.45 -0.7
1,210,780 + AO356_05385 0.45 -1.6
1,210,781 - AO356_05385 0.45 -0.2
1,210,781 - AO356_05385 0.45 +0.1
1,210,781 - AO356_05385 0.45 +1.3
1,210,924 + AO356_05385 0.58 +0.4
1,210,924 + AO356_05385 0.58 +0.1
1,210,924 + AO356_05385 0.58 -0.2
1,210,924 + AO356_05385 0.58 +0.4
1,210,925 - AO356_05385 0.58 +1.2
1,210,925 - AO356_05385 0.58 +0.4
1,210,925 - AO356_05385 0.58 -0.3
1,210,925 - AO356_05385 0.58 +0.6
1,210,925 - AO356_05385 0.58 +0.5
1,210,984 + AO356_05385 0.64 -0.5
1,210,985 - AO356_05385 0.64 -1.2
1,210,985 - AO356_05385 0.64 -0.6
1,210,985 - AO356_05385 0.64 +0.3
1,210,985 - AO356_05385 0.64 -0.4
1,210,994 + AO356_05385 0.65 +0.6
1,210,994 + AO356_05385 0.65 -0.2
1,211,026 + AO356_05385 0.67 +0.3
1,211,027 - AO356_05385 0.68 -0.1
1,211,027 - AO356_05385 0.68 -0.3
1,211,027 - AO356_05385 0.68 -0.1
1,211,110 + AO356_05385 0.75 -0.7
1,211,110 + AO356_05385 0.75 -0.3
1,211,111 - AO356_05385 0.75 +0.3
1,211,111 - AO356_05385 0.75 +0.1
1,211,111 - AO356_05385 0.75 +0.6
1,211,111 - AO356_05385 0.75 +0.4

Or see this region's nucleotide sequence