Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3607 and Shew_3608 overlap by 1 nucleotides Shew_3608 and Shew_3609 are separated by 78 nucleotides Shew_3609 and Shew_3610 are separated by 20 nucleotides Shew_3610 and Shew_3611 are separated by 1 nucleotides
Shew_3607: Shew_3607 - putative methyltransferase (RefSeq), at 4,306,297 to 4,306,884
_3607
Shew_3608: Shew_3608 - hypothetical protein (RefSeq), at 4,306,884 to 4,307,174
_3608
Shew_3609: Shew_3609 - type II secretion system protein N (RefSeq), at 4,307,253 to 4,308,014
_3609
Shew_3610: Shew_3610 - general secretion pathway M protein (RefSeq), at 4,308,035 to 4,308,511
_3610
Shew_3611: Shew_3611 - general secretion pathway protein L (RefSeq), at 4,308,513 to 4,309,703
_3611
Position (kb) 4307
4308
4309 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4306.326 kb on + strand at 4306.501 kb on - strand, within Shew_3607 at 4306.616 kb on - strand, within Shew_3607 at 4306.617 kb on - strand, within Shew_3607 at 4306.632 kb on + strand, within Shew_3607 at 4306.699 kb on + strand, within Shew_3607 at 4306.704 kb on + strand, within Shew_3607 at 4306.755 kb on + strand, within Shew_3607 at 4306.868 kb on - strand at 4307.094 kb on + strand, within Shew_3608 at 4307.322 kb on + strand at 4307.398 kb on + strand, within Shew_3609 at 4307.431 kb on - strand, within Shew_3609 at 4307.849 kb on + strand, within Shew_3609 at 4308.071 kb on + strand at 4308.206 kb on - strand, within Shew_3610 at 4308.350 kb on + strand, within Shew_3610 at 4308.475 kb on + strand at 4308.495 kb on + strand at 4308.530 kb on - strand at 4308.829 kb on + strand, within Shew_3611 at 4308.836 kb on - strand, within Shew_3611
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 4,306,326 + +0.8 4,306,501 - Shew_3607 0.35 +1.5 4,306,616 - Shew_3607 0.54 +0.2 4,306,617 - Shew_3607 0.54 +0.5 4,306,632 + Shew_3607 0.57 +0.8 4,306,699 + Shew_3607 0.68 +1.1 4,306,704 + Shew_3607 0.69 +1.4 4,306,755 + Shew_3607 0.78 +1.2 4,306,868 - +0.4 4,307,094 + Shew_3608 0.72 +1.3 4,307,322 + -1.4 4,307,398 + Shew_3609 0.19 -0.9 4,307,431 - Shew_3609 0.23 -0.3 4,307,849 + Shew_3609 0.78 -3.9 4,308,071 + -1.2 4,308,206 - Shew_3610 0.36 -1.2 4,308,350 + Shew_3610 0.66 +0.8 4,308,475 + -2.3 4,308,495 + -2.4 4,308,530 - +2.4 4,308,829 + Shew_3611 0.27 -1.4 4,308,836 - Shew_3611 0.27 -0.4
Or see this region's nucleotide sequence