Strain Fitness in Shewanella loihica PV-4 around Shew_3228

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
3,852,388	+		Shew_3227	0.67	+0.2
3,852,388	+		Shew_3227	0.67	-1.9
3,852,388	+		Shew_3227	0.67	-0.6
3,852,398	+		Shew_3227	0.67	+0.6
3,852,398	+		Shew_3227	0.67	-0.2
3,852,769	+		Shew_3227	0.82	-0.9
3,852,781	+		Shew_3227	0.83	-0.6
3,852,789	-		Shew_3227	0.83	-0.2
3,852,836	-		Shew_3227	0.85	+0.7
3,852,861	+		Shew_3227	0.86	-0.4
3,852,989	-				-0.5
3,853,124	-				-0.1
3,853,418	+		Shew_3228	0.17	+0.3
3,853,467	-		Shew_3228	0.21	+0.2
3,853,742	+		Shew_3228	0.44	-0.2
3,853,817	+		Shew_3228	0.50	+0.1
3,853,825	-		Shew_3228	0.51	-0.1
3,854,000	+		Shew_3228	0.65	+0.5
3,854,044	+		Shew_3228	0.69	-1.0
3,854,052	-		Shew_3228	0.70	+0.5
3,854,122	-		Shew_3228	0.76	-1.4
3,854,216	-		Shew_3228	0.83	-0.3
3,854,301	+				+0.8
3,854,323	+				-1.6
3,854,368	+				+0.4
3,854,387	+				-0.1
3,854,639	+		Shew_3229	0.55	-0.5
3,854,719	+		Shew_3229	0.73	-0.3
3,854,861	+				-0.0
3,854,915	+				-1.1
3,854,956	-				-0.0
3,854,973	+				+0.1
3,855,125	+		Shew_3230	0.10	+0.9
3,855,212	+		Shew_3230	0.19	+0.5