Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2784 and Shew_2785 are separated by 232 nucleotides Shew_2785 and Shew_2786 are separated by 100 nucleotides Shew_2786 and Shew_2787 are separated by 196 nucleotides
Shew_2784: Shew_2784 - phosphoesterase, PA-phosphatase related (RefSeq), at 3,294,030 to 3,295,358
_2784
Shew_2785: Shew_2785 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 3,295,591 to 3,295,848
_2785
Shew_2786: Shew_2786 - sterol-binding domain-containing protein (RefSeq), at 3,295,949 to 3,296,461
_2786
Shew_2787: Shew_2787 - peptidase U32 (RefSeq), at 3,296,658 to 3,297,659
_2787
Position (kb) 3295
3296 Strain fitness (log2 ratio) -1
0
1 at 3294.593 kb on + strand, within Shew_2784 at 3294.768 kb on + strand, within Shew_2784 at 3294.802 kb on + strand, within Shew_2784 at 3295.019 kb on + strand, within Shew_2784 at 3295.244 kb on + strand at 3295.254 kb on + strand at 3295.260 kb on + strand at 3295.720 kb on + strand, within Shew_2785 at 3295.912 kb on + strand at 3295.934 kb on + strand at 3296.232 kb on + strand, within Shew_2786 at 3296.310 kb on + strand, within Shew_2786
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 3,294,593 + Shew_2784 0.42 +0.3 3,294,768 + Shew_2784 0.56 -0.1 3,294,802 + Shew_2784 0.58 -0.9 3,295,019 + Shew_2784 0.74 +0.8 3,295,244 + -0.3 3,295,254 + -0.2 3,295,260 + -0.6 3,295,720 + Shew_2785 0.50 -0.8 3,295,912 + +0.1 3,295,934 + +0.1 3,296,232 + Shew_2786 0.55 -1.1 3,296,310 + Shew_2786 0.70 -1.4
Or see this region's nucleotide sequence