Strain Fitness in Shewanella loihica PV-4 around Shew_2396

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2395 and Shew_2396 are separated by 730 nucleotidesShew_2396 and Shew_2397 are separated by 103 nucleotides Shew_2395: Shew_2395 - hypothetical protein (RefSeq), at 2,810,027 to 2,810,458 _2395 Shew_2396: Shew_2396 - hypothetical protein (RefSeq), at 2,811,189 to 2,811,413 _2396 Shew_2397: Shew_2397 - hypothetical protein (RefSeq), at 2,811,517 to 2,812,434 _2397 Position (kb) 2811 2812Strain fitness (log2 ratio) -1 0 1at 2810.373 kb on - strand, within Shew_2395at 2810.883 kb on - strandat 2810.913 kb on + strandat 2811.173 kb on + strandat 2811.213 kb on + strand, within Shew_2396at 2811.228 kb on - strand, within Shew_2396at 2811.625 kb on + strand, within Shew_2397at 2812.165 kb on + strand, within Shew_2397at 2812.218 kb on - strand, within Shew_2397

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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2,810,373 - Shew_2395 0.80 -0.0
2,810,883 - +0.2
2,810,913 + -0.2
2,811,173 + -0.2
2,811,213 + Shew_2396 0.11 +0.6
2,811,228 - Shew_2396 0.17 +0.7
2,811,625 + Shew_2397 0.12 +0.7
2,812,165 + Shew_2397 0.71 +0.1
2,812,218 - Shew_2397 0.76 -0.0

Or see this region's nucleotide sequence