Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2328 and Shew_2329 overlap by 4 nucleotides Shew_2329 and Shew_2330 are separated by 119 nucleotides Shew_2330 and Shew_2331 are separated by 113 nucleotides Shew_2331 and Shew_2332 are separated by 68 nucleotides
Shew_2328: Shew_2328 - signal transduction histidine kinase, LytS (RefSeq), at 2,721,211 to 2,722,908
_2328
Shew_2329: Shew_2329 - putative two-component response-regulatory protein YehT (RefSeq), at 2,722,905 to 2,723,615
_2329
Shew_2330: Shew_2330 - carbon starvation protein CstA (RefSeq), at 2,723,735 to 2,725,171
_2330
Shew_2331: Shew_2331 - YaeQ family protein (RefSeq), at 2,725,285 to 2,725,824
_2331
Shew_2332: Shew_2332 - siroheme synthase (RefSeq), at 2,725,893 to 2,726,804
_2332
Position (kb)
2723
2724
2725
2726 Strain fitness (log2 ratio)
-1
0
1
2 at 2722.859 kb on + strand at 2723.139 kb on - strand, within Shew_2329 at 2723.209 kb on - strand, within Shew_2329 at 2723.391 kb on - strand, within Shew_2329 at 2723.890 kb on + strand, within Shew_2330 at 2723.959 kb on + strand, within Shew_2330 at 2724.313 kb on + strand, within Shew_2330 at 2724.602 kb on + strand, within Shew_2330 at 2724.913 kb on + strand, within Shew_2330 at 2724.920 kb on + strand, within Shew_2330 at 2725.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 2,722,859 + +0.0 2,723,139 - Shew_2329 0.33 -0.2 2,723,209 - Shew_2329 0.43 +1.9 2,723,391 - Shew_2329 0.68 +0.1 2,723,890 + Shew_2330 0.11 -0.4 2,723,959 + Shew_2330 0.16 +0.1 2,724,313 + Shew_2330 0.40 -0.6 2,724,602 + Shew_2330 0.60 -0.5 2,724,913 + Shew_2330 0.82 -0.3 2,724,920 + Shew_2330 0.82 -1.1 2,725,794 - +0.0
Or see this region's nucleotide sequence