Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1563 and Shew_1564 are separated by 125 nucleotides Shew_1564 and Shew_1565 are separated by 244 nucleotides Shew_1565 and Shew_1566 are separated by 35 nucleotides
Shew_1563: Shew_1563 - isocitrate dehydrogenase, NADP-dependent (RefSeq), at 1,793,391 to 1,795,610
_1563
Shew_1564: Shew_1564 - cold-shock DNA-binding domain-containing protein (RefSeq), at 1,795,736 to 1,795,942
_1564
Shew_1565: Shew_1565 - ATP-dependent Clp protease adaptor protein ClpS (RefSeq), at 1,796,187 to 1,796,495
_1565
Shew_1566: Shew_1566 - ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq), at 1,796,531 to 1,798,789
_1566
Position (kb) 1795
1796 Strain fitness (log2 ratio) -2
-1
0
1 at 1794.773 kb on + strand, within Shew_1563 at 1795.004 kb on - strand, within Shew_1563 at 1795.415 kb on + strand at 1795.496 kb on + strand at 1795.783 kb on + strand, within Shew_1564 at 1795.807 kb on + strand, within Shew_1564 at 1796.125 kb on + strand at 1796.133 kb on - strand at 1796.466 kb on + strand at 1796.474 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 1,794,773 + Shew_1563 0.62 +0.5 1,795,004 - Shew_1563 0.73 +0.5 1,795,415 + +0.2 1,795,496 + +0.5 1,795,783 + Shew_1564 0.23 -0.5 1,795,807 + Shew_1564 0.34 -2.6 1,796,125 + -0.7 1,796,133 - -1.1 1,796,466 + -1.4 1,796,474 + -0.8
Or see this region's nucleotide sequence