Strain Fitness in Shewanella loihica PV-4 around Shew_1475

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1474 and Shew_1475 are separated by 301 nucleotidesShew_1475 and Shew_1476 are separated by 57 nucleotidesShew_1476 and Shew_1477 overlap by 8 nucleotides Shew_1474: Shew_1474 - peptidase M23B (RefSeq), at 1,699,794 to 1,700,657 _1474 Shew_1475: Shew_1475 - hypothetical protein (RefSeq), at 1,700,959 to 1,701,648 _1475 Shew_1476: Shew_1476 - RNA polymerase sigma factor (RefSeq), at 1,701,706 to 1,702,344 _1476 Shew_1477: Shew_1477 - anti-ECFsigma factor, ChrR (RefSeq), at 1,702,337 to 1,703,086 _1477 Position (kb) 1700 1701 1702Strain fitness (log2 ratio) -2 -1 0 1at 1700.148 kb on + strand, within Shew_1474at 1700.173 kb on - strand, within Shew_1474at 1700.825 kb on + strandat 1701.098 kb on - strand, within Shew_1475at 1701.248 kb on + strand, within Shew_1475at 1701.413 kb on + strand, within Shew_1475at 1701.744 kb on - strandat 1701.933 kb on - strand, within Shew_1476at 1702.007 kb on - strand, within Shew_1476at 1702.203 kb on + strand, within Shew_1476

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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1,700,148 + Shew_1474 0.41 -0.6
1,700,173 - Shew_1474 0.44 +1.3
1,700,825 + -0.9
1,701,098 - Shew_1475 0.20 -0.8
1,701,248 + Shew_1475 0.42 -2.2
1,701,413 + Shew_1475 0.66 -0.5
1,701,744 - +0.1
1,701,933 - Shew_1476 0.36 -1.3
1,702,007 - Shew_1476 0.47 +0.1
1,702,203 + Shew_1476 0.78 +0.1

Or see this region's nucleotide sequence