Strain Fitness in Shewanella loihica PV-4 around Shew_1422

Experiment: methylglyoxal 0.001 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1421 and Shew_1422 are separated by 382 nucleotidesShew_1422 and Shew_1423 are separated by 17 nucleotides Shew_1421: Shew_1421 - hypothetical protein (RefSeq), at 1,635,111 to 1,635,779 _1421 Shew_1422: Shew_1422 - sulfate adenylyltransferase subunit 2 (RefSeq), at 1,636,162 to 1,637,067 _1422 Shew_1423: Shew_1423 - sulfate adenylyltransferase, large subunit (RefSeq), at 1,637,085 to 1,638,542 _1423 Position (kb) 1636 1637 1638Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1635.214 kb on + strand, within Shew_1421at 1635.214 kb on + strand, within Shew_1421at 1635.214 kb on + strand, within Shew_1421at 1635.222 kb on - strand, within Shew_1421at 1635.222 kb on - strand, within Shew_1421at 1635.269 kb on - strand, within Shew_1421at 1635.310 kb on - strand, within Shew_1421at 1635.310 kb on - strand, within Shew_1421at 1635.310 kb on - strand, within Shew_1421at 1635.310 kb on - strand, within Shew_1421at 1635.313 kb on + strand, within Shew_1421at 1635.320 kb on + strand, within Shew_1421at 1635.328 kb on - strand, within Shew_1421at 1635.388 kb on - strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.410 kb on + strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on + strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.418 kb on - strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.420 kb on + strand, within Shew_1421at 1635.421 kb on + strand, within Shew_1421at 1635.421 kb on + strand, within Shew_1421at 1635.428 kb on - strand, within Shew_1421at 1635.428 kb on + strand, within Shew_1421at 1635.428 kb on - strand, within Shew_1421at 1635.428 kb on - strand, within Shew_1421at 1635.428 kb on - strand, within Shew_1421at 1635.428 kb on - strand, within Shew_1421at 1635.429 kb on - strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.433 kb on + strand, within Shew_1421at 1635.438 kb on + strand, within Shew_1421at 1635.441 kb on - strand, within Shew_1421at 1635.441 kb on - strand, within Shew_1421at 1635.441 kb on - strand, within Shew_1421at 1635.448 kb on - strand, within Shew_1421at 1635.529 kb on + strand, within Shew_1421at 1635.534 kb on + strand, within Shew_1421at 1635.535 kb on + strand, within Shew_1421at 1635.535 kb on + strand, within Shew_1421at 1635.535 kb on + strand, within Shew_1421at 1635.542 kb on + strand, within Shew_1421at 1635.543 kb on - strand, within Shew_1421at 1635.543 kb on - strand, within Shew_1421at 1635.543 kb on - strand, within Shew_1421at 1635.548 kb on + strand, within Shew_1421at 1635.550 kb on - strand, within Shew_1421at 1635.555 kb on - strand, within Shew_1421at 1635.574 kb on - strand, within Shew_1421at 1635.575 kb on - strand, within Shew_1421at 1635.616 kb on + strand, within Shew_1421at 1635.616 kb on + strand, within Shew_1421at 1635.630 kb on + strand, within Shew_1421at 1635.793 kb on + strandat 1636.157 kb on + strandat 1636.166 kb on - strandat 1636.790 kb on - strand, within Shew_1422at 1636.977 kb on + strandat 1637.098 kb on - strandat 1637.470 kb on + strand, within Shew_1423at 1637.845 kb on - strand, within Shew_1423

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
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1,635,214 + Shew_1421 0.15 -0.3
1,635,214 + Shew_1421 0.15 -0.5
1,635,214 + Shew_1421 0.15 -0.3
1,635,222 - Shew_1421 0.17 +0.5
1,635,222 - Shew_1421 0.17 +0.4
1,635,269 - Shew_1421 0.24 +0.5
1,635,310 - Shew_1421 0.30 -0.4
1,635,310 - Shew_1421 0.30 -0.3
1,635,310 - Shew_1421 0.30 -0.3
1,635,310 - Shew_1421 0.30 +2.8
1,635,313 + Shew_1421 0.30 +0.1
1,635,320 + Shew_1421 0.31 +0.3
1,635,328 - Shew_1421 0.32 +0.3
1,635,388 - Shew_1421 0.41 +1.3
1,635,410 + Shew_1421 0.45 -0.6
1,635,410 + Shew_1421 0.45 +0.7
1,635,410 + Shew_1421 0.45 +0.1
1,635,410 + Shew_1421 0.45 -2.3
1,635,410 + Shew_1421 0.45 -0.6
1,635,410 + Shew_1421 0.45 +0.5
1,635,410 + Shew_1421 0.45 +1.1
1,635,410 + Shew_1421 0.45 +0.4
1,635,410 + Shew_1421 0.45 +0.3
1,635,410 + Shew_1421 0.45 -0.3
1,635,410 + Shew_1421 0.45 +0.4
1,635,410 + Shew_1421 0.45 +0.3
1,635,410 + Shew_1421 0.45 -1.9
1,635,410 + Shew_1421 0.45 -1.2
1,635,410 + Shew_1421 0.45 +0.1
1,635,410 + Shew_1421 0.45 -0.2
1,635,410 + Shew_1421 0.45 +0.5
1,635,410 + Shew_1421 0.45 -0.1
1,635,410 + Shew_1421 0.45 -0.0
1,635,410 + Shew_1421 0.45 +0.1
1,635,410 + Shew_1421 0.45 -2.9
1,635,410 + Shew_1421 0.45 +0.0
1,635,410 + Shew_1421 0.45 +0.2
1,635,410 + Shew_1421 0.45 -0.6
1,635,410 + Shew_1421 0.45 +0.0
1,635,410 + Shew_1421 0.45 +0.4
1,635,410 + Shew_1421 0.45 +0.2
1,635,410 + Shew_1421 0.45 +0.6
1,635,418 - Shew_1421 0.46 +1.7
1,635,418 + Shew_1421 0.46 -0.2
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 +0.7
1,635,418 - Shew_1421 0.46 +0.8
1,635,418 - Shew_1421 0.46 +0.2
1,635,418 - Shew_1421 0.46 +0.2
1,635,418 - Shew_1421 0.46 +0.1
1,635,418 - Shew_1421 0.46 -0.5
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 +2.9
1,635,418 - Shew_1421 0.46 +0.5
1,635,418 - Shew_1421 0.46 +0.5
1,635,418 - Shew_1421 0.46 +0.7
1,635,418 - Shew_1421 0.46 -1.0
1,635,418 - Shew_1421 0.46 +1.0
1,635,418 - Shew_1421 0.46 -0.2
1,635,418 - Shew_1421 0.46 -1.0
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 +0.2
1,635,418 - Shew_1421 0.46 +0.9
1,635,418 - Shew_1421 0.46 +0.1
1,635,418 - Shew_1421 0.46 -0.7
1,635,418 - Shew_1421 0.46 +0.0
1,635,418 - Shew_1421 0.46 -0.3
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 -0.1
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 +0.4
1,635,418 - Shew_1421 0.46 +0.1
1,635,418 - Shew_1421 0.46 -0.3
1,635,418 - Shew_1421 0.46 +1.0
1,635,418 - Shew_1421 0.46 +0.3
1,635,418 - Shew_1421 0.46 -0.2
1,635,418 - Shew_1421 0.46 +0.1
1,635,418 - Shew_1421 0.46 +0.4
1,635,420 + Shew_1421 0.46 +0.9
1,635,420 + Shew_1421 0.46 +0.3
1,635,420 + Shew_1421 0.46 +0.2
1,635,420 + Shew_1421 0.46 -0.0
1,635,420 + Shew_1421 0.46 -0.3
1,635,420 + Shew_1421 0.46 -0.1
1,635,420 + Shew_1421 0.46 +0.3
1,635,420 + Shew_1421 0.46 +0.3
1,635,420 + Shew_1421 0.46 +0.2
1,635,421 + Shew_1421 0.46 -1.2
1,635,421 + Shew_1421 0.46 +0.2
1,635,428 - Shew_1421 0.47 +1.1
1,635,428 + Shew_1421 0.47 +0.2
1,635,428 - Shew_1421 0.47 +0.4
1,635,428 - Shew_1421 0.47 +0.8
1,635,428 - Shew_1421 0.47 +0.4
1,635,428 - Shew_1421 0.47 -1.2
1,635,429 - Shew_1421 0.48 -0.3
1,635,433 + Shew_1421 0.48 +0.1
1,635,433 + Shew_1421 0.48 -0.2
1,635,433 + Shew_1421 0.48 -0.4
1,635,433 + Shew_1421 0.48 +0.7
1,635,433 + Shew_1421 0.48 -0.8
1,635,433 + Shew_1421 0.48 -1.2
1,635,433 + Shew_1421 0.48 +0.0
1,635,433 + Shew_1421 0.48 -0.9
1,635,438 + Shew_1421 0.49 -0.2
1,635,441 - Shew_1421 0.49 -0.3
1,635,441 - Shew_1421 0.49 +0.3
1,635,441 - Shew_1421 0.49 +0.1
1,635,448 - Shew_1421 0.50 +0.3
1,635,529 + Shew_1421 0.62 -0.0
1,635,534 + Shew_1421 0.63 -0.6
1,635,535 + Shew_1421 0.63 +0.2
1,635,535 + Shew_1421 0.63 -0.0
1,635,535 + Shew_1421 0.63 -0.8
1,635,542 + Shew_1421 0.64 -0.2
1,635,543 - Shew_1421 0.65 +0.9
1,635,543 - Shew_1421 0.65 -1.2
1,635,543 - Shew_1421 0.65 +0.6
1,635,548 + Shew_1421 0.65 -0.2
1,635,550 - Shew_1421 0.66 -0.3
1,635,555 - Shew_1421 0.66 +0.7
1,635,574 - Shew_1421 0.69 +0.3
1,635,575 - Shew_1421 0.69 -1.5
1,635,616 + Shew_1421 0.75 +0.1
1,635,616 + Shew_1421 0.75 -1.1
1,635,630 + Shew_1421 0.78 -2.3
1,635,793 + +0.3
1,636,157 + -1.6
1,636,166 - -1.6
1,636,790 - Shew_1422 0.69 -3.1
1,636,977 + -2.0
1,637,098 - -1.3
1,637,470 + Shew_1423 0.26 -0.4
1,637,845 - Shew_1423 0.52 -2.1

Or see this region's nucleotide sequence