Strain Fitness in Shewanella loihica PV-4 around Shew_1278

Experiment: methylglyoxal 0.001 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1277 and Shew_1278 are separated by 2 nucleotidesShew_1278 and Shew_1279 are separated by 23 nucleotides Shew_1277: Shew_1277 - putative signal transduction protein (RefSeq), at 1,477,688 to 1,479,136 _1277 Shew_1278: Shew_1278 - hypothetical protein (RefSeq), at 1,479,139 to 1,479,612 _1278 Shew_1279: Shew_1279 - hypothetical protein (RefSeq), at 1,479,636 to 1,480,460 _1279 Position (kb) 1479 1480Strain fitness (log2 ratio) -1 0 1 2at 1478.139 kb on - strand, within Shew_1277at 1478.178 kb on + strand, within Shew_1277at 1478.178 kb on + strand, within Shew_1277at 1478.356 kb on - strand, within Shew_1277at 1478.593 kb on + strand, within Shew_1277at 1478.615 kb on - strand, within Shew_1277at 1479.139 kb on - strandat 1479.158 kb on + strandat 1479.511 kb on + strand, within Shew_1278at 1480.426 kb on + strandat 1480.441 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol%
remove
1,478,139 - Shew_1277 0.31 +0.1
1,478,178 + Shew_1277 0.34 +0.0
1,478,178 + Shew_1277 0.34 -0.1
1,478,356 - Shew_1277 0.46 -0.3
1,478,593 + Shew_1277 0.62 -0.4
1,478,615 - Shew_1277 0.64 -1.2
1,479,139 - -0.0
1,479,158 + +1.9
1,479,511 + Shew_1278 0.78 -1.7
1,480,426 + -0.2
1,480,441 + -0.3

Or see this region's nucleotide sequence