Strain Fitness in Shewanella loihica PV-4 around Shew_1215

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
1,410,071	-		Shew_1214	0.79	-0.2
1,410,236	+		Shew_1214	0.85	-0.6
1,410,342	+		Shew_1214	0.90	+0.3
1,410,620	+				-2.6
1,410,783	-				-0.3
1,410,856	+				-2.3
1,410,856	+				-3.7
1,410,856	+				-3.7
1,410,856	+				-4.0
1,410,864	-				-2.2
1,410,864	-				-3.2
1,410,900	+				-2.1
1,411,185	+	recA	Shew_1215	0.23	-3.0
1,411,495	+	recA	Shew_1215	0.52	-4.9
1,411,549	-	recA	Shew_1215	0.57	-2.0
1,411,575	+	recA	Shew_1215	0.60	-2.7
1,412,153	+		Shew_1216	0.16	-0.2
1,412,291	+		Shew_1216	0.46	-0.1
1,412,294	-		Shew_1216	0.47	-0.9
1,412,304	-		Shew_1216	0.49	+0.3
1,412,455	-		Shew_1216	0.82	-0.4