Experiment: methylglyoxal 0.001 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0394 and Shew_0395 are separated by 73 nucleotides Shew_0395 and Shew_0396 are separated by 89 nucleotides Shew_0396 and Shew_0397 are separated by 14 nucleotides Shew_0397 and Shew_0398 are separated by 146 nucleotides
Shew_0394: Shew_0394 - hypothetical protein (RefSeq), at 445,467 to 445,958
_0394
Shew_0395: Shew_0395 - methylation site containing protein (RefSeq), at 446,032 to 446,667
_0395
Shew_0396: Shew_0396 - methylation site containing protein (RefSeq), at 446,757 to 447,266
_0396
Shew_0397: Shew_0397 - methylation site containing protein (RefSeq), at 447,281 to 447,772
_0397
Shew_0398: Shew_0398 - MSHA pilin protein MshC (RefSeq), at 447,919 to 448,368
_0398
Position (kb) 446
447
448 Strain fitness (log2 ratio) -1
0
1 at 445.976 kb on - strand at 446.335 kb on + strand, within Shew_0395 at 446.641 kb on + strand at 446.781 kb on - strand at 447.023 kb on - strand, within Shew_0396 at 447.033 kb on - strand, within Shew_0396 at 447.144 kb on - strand, within Shew_0396 at 447.229 kb on + strand at 447.548 kb on + strand, within Shew_0397 at 447.785 kb on + strand at 447.793 kb on - strand at 448.031 kb on + strand, within Shew_0398 at 448.039 kb on - strand, within Shew_0398
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.001 vol% remove 445,976 - +0.7 446,335 + Shew_0395 0.48 +0.2 446,641 + +0.4 446,781 - -0.5 447,023 - Shew_0396 0.52 -0.9 447,033 - Shew_0396 0.54 -0.7 447,144 - Shew_0396 0.76 -1.6 447,229 + -0.4 447,548 + Shew_0397 0.54 -0.1 447,785 + -0.1 447,793 - -0.1 448,031 + Shew_0398 0.25 -1.1 448,039 - Shew_0398 0.27 -0.1
Or see this region's nucleotide sequence