Strain Fitness in Shewanella loihica PV-4 around Shew_0129

Experiment: methylglyoxal 0.001 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.001 vol%
138,203	-				+0.7
138,265	-				+0.4
138,266	+				+0.1
138,274	-				+0.4
138,276	+				-1.0
138,276	+				+1.2
138,276	+				-0.0
138,276	+				-0.1
138,276	+				-1.4
138,276	+				+0.6
138,276	+				+0.0
138,276	+				-0.0
138,276	+				+0.2
138,276	+				+0.3
138,284	-				-0.2
138,284	-				+0.1
138,284	-				+0.8
138,284	-				+0.9
138,284	-				+0.1
138,284	-				-0.0
138,284	-				-0.3
138,284	-				-0.3
138,284	-				-0.2
138,660	-		Shew_0128	0.59	+0.2
138,660	-		Shew_0128	0.59	-0.1
138,829	+		Shew_0128	0.84	+0.3
138,843	+		Shew_0128	0.87	-0.0
139,081	-				+0.0
139,161	-	nudE	Shew_0129	0.24	-0.7
139,239	+	nudE	Shew_0129	0.38	-1.9
139,310	-	nudE	Shew_0129	0.51	+0.0
139,326	+	nudE	Shew_0129	0.54	-1.7
139,367	-	nudE	Shew_0129	0.62	-0.6
139,488	+	nudE	Shew_0129	0.84	-0.4
139,642	-				+0.1
139,917	-		Shew_0130	0.35	+0.7
140,097	-		Shew_0130	0.57	+0.4
140,201	-		Shew_0130	0.70	-1.5
140,442	+				+0.1
140,476	-				+0.6