Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2324

Experiment: m.b. Zinc 0.3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2322 and Dshi_2323 are separated by 11 nucleotidesDshi_2323 and Dshi_2324 are separated by 90 nucleotidesDshi_2324 and Dshi_2325 are separated by 95 nucleotides Dshi_2322: Dshi_2322 - protein of unknown function DUF1326 (RefSeq), at 2,453,788 to 2,454,489 _2322 Dshi_2323: Dshi_2323 - hypothetical protein (RefSeq), at 2,454,501 to 2,455,259 _2323 Dshi_2324: Dshi_2324 - regulatory protein GntR HTH (RefSeq), at 2,455,350 to 2,456,078 _2324 Dshi_2325: Dshi_2325 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (RefSeq), at 2,456,174 to 2,457,220 _2325 Position (kb) 2455 2456 2457Strain fitness (log2 ratio) -2 -1 0 1 2at 2454.456 kb on + strandat 2454.471 kb on + strandat 2454.477 kb on - strandat 2454.479 kb on + strandat 2454.487 kb on - strandat 2454.508 kb on - strandat 2454.530 kb on + strandat 2454.546 kb on + strandat 2454.573 kb on - strandat 2454.583 kb on - strand, within Dshi_2323at 2454.663 kb on + strand, within Dshi_2323at 2454.685 kb on - strand, within Dshi_2323at 2454.802 kb on + strand, within Dshi_2323at 2454.850 kb on + strand, within Dshi_2323at 2454.850 kb on - strand, within Dshi_2323at 2454.859 kb on - strand, within Dshi_2323at 2454.864 kb on - strand, within Dshi_2323at 2454.883 kb on - strand, within Dshi_2323at 2454.898 kb on + strand, within Dshi_2323at 2454.930 kb on - strand, within Dshi_2323at 2454.971 kb on - strand, within Dshi_2323at 2454.981 kb on - strand, within Dshi_2323at 2454.986 kb on - strand, within Dshi_2323at 2455.019 kb on + strand, within Dshi_2323at 2455.036 kb on - strand, within Dshi_2323at 2455.048 kb on - strand, within Dshi_2323at 2455.129 kb on + strand, within Dshi_2323at 2455.156 kb on - strand, within Dshi_2323at 2455.260 kb on - strandat 2455.260 kb on - strandat 2455.263 kb on - strandat 2455.263 kb on - strandat 2455.346 kb on - strandat 2455.371 kb on + strandat 2455.411 kb on - strandat 2455.418 kb on + strandat 2455.527 kb on + strand, within Dshi_2324at 2455.563 kb on + strand, within Dshi_2324at 2455.596 kb on - strand, within Dshi_2324at 2455.635 kb on - strand, within Dshi_2324at 2455.635 kb on - strand, within Dshi_2324at 2455.689 kb on + strand, within Dshi_2324at 2455.694 kb on + strand, within Dshi_2324at 2455.816 kb on + strand, within Dshi_2324at 2455.817 kb on - strand, within Dshi_2324at 2455.840 kb on - strand, within Dshi_2324at 2455.869 kb on - strand, within Dshi_2324at 2455.972 kb on + strand, within Dshi_2324at 2456.006 kb on + strandat 2456.009 kb on - strandat 2456.046 kb on + strandat 2456.091 kb on - strandat 2456.125 kb on + strandat 2456.183 kb on + strandat 2456.266 kb on - strandat 2456.298 kb on + strand, within Dshi_2325at 2456.314 kb on - strand, within Dshi_2325at 2456.352 kb on + strand, within Dshi_2325at 2456.399 kb on + strand, within Dshi_2325at 2456.446 kb on + strand, within Dshi_2325at 2456.489 kb on - strand, within Dshi_2325at 2456.496 kb on - strand, within Dshi_2325at 2456.501 kb on - strand, within Dshi_2325at 2456.650 kb on + strand, within Dshi_2325at 2456.662 kb on + strand, within Dshi_2325at 2456.765 kb on - strand, within Dshi_2325at 2456.832 kb on - strand, within Dshi_2325at 2456.832 kb on - strand, within Dshi_2325at 2456.843 kb on + strand, within Dshi_2325at 2456.899 kb on + strand, within Dshi_2325at 2456.924 kb on + strand, within Dshi_2325at 2456.929 kb on - strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.937 kb on + strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.945 kb on - strand, within Dshi_2325at 2456.971 kb on + strand, within Dshi_2325at 2456.972 kb on + strand, within Dshi_2325at 2456.972 kb on + strand, within Dshi_2325at 2456.980 kb on - strand, within Dshi_2325at 2457.026 kb on + strand, within Dshi_2325at 2457.026 kb on + strand, within Dshi_2325at 2457.031 kb on + strand, within Dshi_2325at 2457.053 kb on + strand, within Dshi_2325

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM
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2,454,456 + +0.5
2,454,471 + -1.3
2,454,477 - -0.2
2,454,479 + -0.2
2,454,487 - -1.2
2,454,508 - -0.0
2,454,530 + -0.2
2,454,546 + -0.2
2,454,573 - -2.2
2,454,583 - Dshi_2323 0.11 +0.4
2,454,663 + Dshi_2323 0.21 -0.2
2,454,685 - Dshi_2323 0.24 -2.2
2,454,802 + Dshi_2323 0.40 +0.1
2,454,850 + Dshi_2323 0.46 +0.9
2,454,850 - Dshi_2323 0.46 -1.6
2,454,859 - Dshi_2323 0.47 +0.1
2,454,864 - Dshi_2323 0.48 +0.5
2,454,883 - Dshi_2323 0.50 +0.8
2,454,898 + Dshi_2323 0.52 -0.2
2,454,930 - Dshi_2323 0.57 +0.1
2,454,971 - Dshi_2323 0.62 -1.1
2,454,981 - Dshi_2323 0.63 +1.5
2,454,986 - Dshi_2323 0.64 +0.6
2,455,019 + Dshi_2323 0.68 +0.3
2,455,036 - Dshi_2323 0.70 -0.3
2,455,048 - Dshi_2323 0.72 +0.3
2,455,129 + Dshi_2323 0.83 -1.9
2,455,156 - Dshi_2323 0.86 -0.4
2,455,260 - +0.1
2,455,260 - -0.6
2,455,263 - +0.6
2,455,263 - -0.0
2,455,346 - +0.8
2,455,371 + -0.2
2,455,411 - -0.7
2,455,418 + -0.2
2,455,527 + Dshi_2324 0.24 -0.3
2,455,563 + Dshi_2324 0.29 -1.0
2,455,596 - Dshi_2324 0.34 -0.2
2,455,635 - Dshi_2324 0.39 -0.7
2,455,635 - Dshi_2324 0.39 -0.4
2,455,689 + Dshi_2324 0.47 -0.7
2,455,694 + Dshi_2324 0.47 +1.8
2,455,816 + Dshi_2324 0.64 -0.1
2,455,817 - Dshi_2324 0.64 +0.1
2,455,840 - Dshi_2324 0.67 -1.5
2,455,869 - Dshi_2324 0.71 +0.6
2,455,972 + Dshi_2324 0.85 -1.8
2,456,006 + +0.1
2,456,009 - -0.5
2,456,046 + +0.4
2,456,091 - +0.6
2,456,125 + +0.3
2,456,183 + +0.4
2,456,266 - +0.3
2,456,298 + Dshi_2325 0.12 -0.4
2,456,314 - Dshi_2325 0.13 +0.3
2,456,352 + Dshi_2325 0.17 -0.1
2,456,399 + Dshi_2325 0.21 -0.6
2,456,446 + Dshi_2325 0.26 +0.1
2,456,489 - Dshi_2325 0.30 -0.2
2,456,496 - Dshi_2325 0.31 -0.2
2,456,501 - Dshi_2325 0.31 +0.3
2,456,650 + Dshi_2325 0.45 +0.1
2,456,662 + Dshi_2325 0.47 -0.3
2,456,765 - Dshi_2325 0.56 -0.6
2,456,832 - Dshi_2325 0.63 +0.1
2,456,832 - Dshi_2325 0.63 +0.3
2,456,843 + Dshi_2325 0.64 -0.6
2,456,899 + Dshi_2325 0.69 +0.9
2,456,924 + Dshi_2325 0.72 -1.2
2,456,929 - Dshi_2325 0.72 -0.5
2,456,937 + Dshi_2325 0.73 +0.3
2,456,937 + Dshi_2325 0.73 +0.7
2,456,937 + Dshi_2325 0.73 +0.1
2,456,937 + Dshi_2325 0.73 -0.1
2,456,945 - Dshi_2325 0.74 -0.9
2,456,945 - Dshi_2325 0.74 -1.2
2,456,945 - Dshi_2325 0.74 -0.2
2,456,945 - Dshi_2325 0.74 -0.3
2,456,945 - Dshi_2325 0.74 -0.6
2,456,945 - Dshi_2325 0.74 +1.5
2,456,971 + Dshi_2325 0.76 -1.0
2,456,972 + Dshi_2325 0.76 +0.2
2,456,972 + Dshi_2325 0.76 -1.2
2,456,980 - Dshi_2325 0.77 -0.6
2,457,026 + Dshi_2325 0.81 +0.1
2,457,026 + Dshi_2325 0.81 +0.6
2,457,031 + Dshi_2325 0.82 -0.4
2,457,053 + Dshi_2325 0.84 -0.8

Or see this region's nucleotide sequence