Experiment: m.b. Zinc 0.3 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_2322 and Dshi_2323 are separated by 11 nucleotides Dshi_2323 and Dshi_2324 are separated by 90 nucleotides Dshi_2324 and Dshi_2325 are separated by 95 nucleotides
Dshi_2322: Dshi_2322 - protein of unknown function DUF1326 (RefSeq), at 2,453,788 to 2,454,489
_2322
Dshi_2323: Dshi_2323 - hypothetical protein (RefSeq), at 2,454,501 to 2,455,259
_2323
Dshi_2324: Dshi_2324 - regulatory protein GntR HTH (RefSeq), at 2,455,350 to 2,456,078
_2324
Dshi_2325: Dshi_2325 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein (RefSeq), at 2,456,174 to 2,457,220
_2325
Position (kb)
2455
2456
2457 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2454.456 kb on + strand at 2454.471 kb on + strand at 2454.477 kb on - strand at 2454.479 kb on + strand at 2454.487 kb on - strand at 2454.508 kb on - strand at 2454.530 kb on + strand at 2454.546 kb on + strand at 2454.573 kb on - strand at 2454.583 kb on - strand, within Dshi_2323 at 2454.663 kb on + strand, within Dshi_2323 at 2454.685 kb on - strand, within Dshi_2323 at 2454.802 kb on + strand, within Dshi_2323 at 2454.850 kb on + strand, within Dshi_2323 at 2454.850 kb on - strand, within Dshi_2323 at 2454.859 kb on - strand, within Dshi_2323 at 2454.864 kb on - strand, within Dshi_2323 at 2454.883 kb on - strand, within Dshi_2323 at 2454.898 kb on + strand, within Dshi_2323 at 2454.930 kb on - strand, within Dshi_2323 at 2454.971 kb on - strand, within Dshi_2323 at 2454.981 kb on - strand, within Dshi_2323 at 2454.986 kb on - strand, within Dshi_2323 at 2455.019 kb on + strand, within Dshi_2323 at 2455.036 kb on - strand, within Dshi_2323 at 2455.048 kb on - strand, within Dshi_2323 at 2455.129 kb on + strand, within Dshi_2323 at 2455.156 kb on - strand, within Dshi_2323 at 2455.260 kb on - strand at 2455.260 kb on - strand at 2455.263 kb on - strand at 2455.263 kb on - strand at 2455.346 kb on - strand at 2455.371 kb on + strand at 2455.411 kb on - strand at 2455.418 kb on + strand at 2455.527 kb on + strand, within Dshi_2324 at 2455.563 kb on + strand, within Dshi_2324 at 2455.596 kb on - strand, within Dshi_2324 at 2455.635 kb on - strand, within Dshi_2324 at 2455.635 kb on - strand, within Dshi_2324 at 2455.689 kb on + strand, within Dshi_2324 at 2455.694 kb on + strand, within Dshi_2324 at 2455.816 kb on + strand, within Dshi_2324 at 2455.817 kb on - strand, within Dshi_2324 at 2455.840 kb on - strand, within Dshi_2324 at 2455.869 kb on - strand, within Dshi_2324 at 2455.972 kb on + strand, within Dshi_2324 at 2456.006 kb on + strand at 2456.009 kb on - strand at 2456.046 kb on + strand at 2456.091 kb on - strand at 2456.125 kb on + strand at 2456.183 kb on + strand at 2456.266 kb on - strand at 2456.298 kb on + strand, within Dshi_2325 at 2456.314 kb on - strand, within Dshi_2325 at 2456.352 kb on + strand, within Dshi_2325 at 2456.399 kb on + strand, within Dshi_2325 at 2456.446 kb on + strand, within Dshi_2325 at 2456.489 kb on - strand, within Dshi_2325 at 2456.496 kb on - strand, within Dshi_2325 at 2456.501 kb on - strand, within Dshi_2325 at 2456.650 kb on + strand, within Dshi_2325 at 2456.662 kb on + strand, within Dshi_2325 at 2456.765 kb on - strand, within Dshi_2325 at 2456.832 kb on - strand, within Dshi_2325 at 2456.832 kb on - strand, within Dshi_2325 at 2456.843 kb on + strand, within Dshi_2325 at 2456.899 kb on + strand, within Dshi_2325 at 2456.924 kb on + strand, within Dshi_2325 at 2456.929 kb on - strand, within Dshi_2325 at 2456.937 kb on + strand, within Dshi_2325 at 2456.937 kb on + strand, within Dshi_2325 at 2456.937 kb on + strand, within Dshi_2325 at 2456.937 kb on + strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.945 kb on - strand, within Dshi_2325 at 2456.971 kb on + strand, within Dshi_2325 at 2456.972 kb on + strand, within Dshi_2325 at 2456.972 kb on + strand, within Dshi_2325 at 2456.980 kb on - strand, within Dshi_2325 at 2457.026 kb on + strand, within Dshi_2325 at 2457.026 kb on + strand, within Dshi_2325 at 2457.031 kb on + strand, within Dshi_2325 at 2457.053 kb on + strand, within Dshi_2325
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM remove 2,454,456 + +0.5 2,454,471 + -1.3 2,454,477 - -0.2 2,454,479 + -0.2 2,454,487 - -1.2 2,454,508 - -0.0 2,454,530 + -0.2 2,454,546 + -0.2 2,454,573 - -2.2 2,454,583 - Dshi_2323 0.11 +0.4 2,454,663 + Dshi_2323 0.21 -0.2 2,454,685 - Dshi_2323 0.24 -2.2 2,454,802 + Dshi_2323 0.40 +0.1 2,454,850 + Dshi_2323 0.46 +0.9 2,454,850 - Dshi_2323 0.46 -1.6 2,454,859 - Dshi_2323 0.47 +0.1 2,454,864 - Dshi_2323 0.48 +0.5 2,454,883 - Dshi_2323 0.50 +0.8 2,454,898 + Dshi_2323 0.52 -0.2 2,454,930 - Dshi_2323 0.57 +0.1 2,454,971 - Dshi_2323 0.62 -1.1 2,454,981 - Dshi_2323 0.63 +1.5 2,454,986 - Dshi_2323 0.64 +0.6 2,455,019 + Dshi_2323 0.68 +0.3 2,455,036 - Dshi_2323 0.70 -0.3 2,455,048 - Dshi_2323 0.72 +0.3 2,455,129 + Dshi_2323 0.83 -1.9 2,455,156 - Dshi_2323 0.86 -0.4 2,455,260 - +0.1 2,455,260 - -0.6 2,455,263 - +0.6 2,455,263 - -0.0 2,455,346 - +0.8 2,455,371 + -0.2 2,455,411 - -0.7 2,455,418 + -0.2 2,455,527 + Dshi_2324 0.24 -0.3 2,455,563 + Dshi_2324 0.29 -1.0 2,455,596 - Dshi_2324 0.34 -0.2 2,455,635 - Dshi_2324 0.39 -0.7 2,455,635 - Dshi_2324 0.39 -0.4 2,455,689 + Dshi_2324 0.47 -0.7 2,455,694 + Dshi_2324 0.47 +1.8 2,455,816 + Dshi_2324 0.64 -0.1 2,455,817 - Dshi_2324 0.64 +0.1 2,455,840 - Dshi_2324 0.67 -1.5 2,455,869 - Dshi_2324 0.71 +0.6 2,455,972 + Dshi_2324 0.85 -1.8 2,456,006 + +0.1 2,456,009 - -0.5 2,456,046 + +0.4 2,456,091 - +0.6 2,456,125 + +0.3 2,456,183 + +0.4 2,456,266 - +0.3 2,456,298 + Dshi_2325 0.12 -0.4 2,456,314 - Dshi_2325 0.13 +0.3 2,456,352 + Dshi_2325 0.17 -0.1 2,456,399 + Dshi_2325 0.21 -0.6 2,456,446 + Dshi_2325 0.26 +0.1 2,456,489 - Dshi_2325 0.30 -0.2 2,456,496 - Dshi_2325 0.31 -0.2 2,456,501 - Dshi_2325 0.31 +0.3 2,456,650 + Dshi_2325 0.45 +0.1 2,456,662 + Dshi_2325 0.47 -0.3 2,456,765 - Dshi_2325 0.56 -0.6 2,456,832 - Dshi_2325 0.63 +0.1 2,456,832 - Dshi_2325 0.63 +0.3 2,456,843 + Dshi_2325 0.64 -0.6 2,456,899 + Dshi_2325 0.69 +0.9 2,456,924 + Dshi_2325 0.72 -1.2 2,456,929 - Dshi_2325 0.72 -0.5 2,456,937 + Dshi_2325 0.73 +0.3 2,456,937 + Dshi_2325 0.73 +0.7 2,456,937 + Dshi_2325 0.73 +0.1 2,456,937 + Dshi_2325 0.73 -0.1 2,456,945 - Dshi_2325 0.74 -0.9 2,456,945 - Dshi_2325 0.74 -1.2 2,456,945 - Dshi_2325 0.74 -0.2 2,456,945 - Dshi_2325 0.74 -0.3 2,456,945 - Dshi_2325 0.74 -0.6 2,456,945 - Dshi_2325 0.74 +1.5 2,456,971 + Dshi_2325 0.76 -1.0 2,456,972 + Dshi_2325 0.76 +0.2 2,456,972 + Dshi_2325 0.76 -1.2 2,456,980 - Dshi_2325 0.77 -0.6 2,457,026 + Dshi_2325 0.81 +0.1 2,457,026 + Dshi_2325 0.81 +0.6 2,457,031 + Dshi_2325 0.82 -0.4 2,457,053 + Dshi_2325 0.84 -0.8
Or see this region's nucleotide sequence