Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1559

Experiment: m.b. Zinc 0.3 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_1557 and Dshi_1558 overlap by 34 nucleotidesDshi_1558 and Dshi_1559 are separated by 115 nucleotidesDshi_1559 and Dshi_1560 are separated by 137 nucleotidesDshi_1560 and Dshi_1561 are separated by 132 nucleotides Dshi_1557: Dshi_1557 - DSBA oxidoreductase (RefSeq), at 1,619,422 to 1,620,090 _1557 Dshi_1558: Dshi_1558 - hypothetical protein (RefSeq), at 1,620,057 to 1,620,377 _1558 Dshi_1559: Dshi_1559 - drug resistance transporter, Bcr/CflA subfamily (RefSeq), at 1,620,493 to 1,621,701 _1559 Dshi_1560: Dshi_1560 - hypothetical protein (RefSeq), at 1,621,839 to 1,622,270 _1560 Dshi_1561: Dshi_1561 - transcription-repair coupling factor (RefSeq), at 1,622,403 to 1,625,885 _1561 Position (kb) 1620 1621 1622Strain fitness (log2 ratio) -1 0 1 2at 1619.692 kb on + strand, within Dshi_1557at 1619.752 kb on - strand, within Dshi_1557at 1620.354 kb on + strandat 1620.374 kb on + strandat 1620.505 kb on + strandat 1620.651 kb on - strand, within Dshi_1559at 1620.768 kb on + strand, within Dshi_1559at 1620.843 kb on + strand, within Dshi_1559at 1620.878 kb on - strand, within Dshi_1559at 1620.878 kb on - strand, within Dshi_1559at 1621.143 kb on - strand, within Dshi_1559at 1621.638 kb on - strandat 1621.646 kb on - strandat 1621.824 kb on + strandat 1622.044 kb on + strand, within Dshi_1560at 1622.106 kb on + strand, within Dshi_1560at 1622.358 kb on + strandat 1622.467 kb on + strandat 1622.649 kb on - strandat 1622.670 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.3 mM
remove
1,619,692 + Dshi_1557 0.40 +0.3
1,619,752 - Dshi_1557 0.49 +1.2
1,620,354 + +0.1
1,620,374 + -0.1
1,620,505 + +0.6
1,620,651 - Dshi_1559 0.13 +0.1
1,620,768 + Dshi_1559 0.23 +0.7
1,620,843 + Dshi_1559 0.29 +0.1
1,620,878 - Dshi_1559 0.32 -0.2
1,620,878 - Dshi_1559 0.32 -0.1
1,621,143 - Dshi_1559 0.54 +2.0
1,621,638 - +1.0
1,621,646 - +0.9
1,621,824 + +0.7
1,622,044 + Dshi_1560 0.47 +0.3
1,622,106 + Dshi_1560 0.62 +0.8
1,622,358 + -0.4
1,622,467 + +0.9
1,622,649 - +0.1
1,622,670 - -1.0

Or see this region's nucleotide sequence