Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2523

Experiment: MoLS4 with L-Glutamate (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntaroK-2 and DVU2522 overlap by 8 nucleotidesDVU2522 and DVU2523 are separated by 29 nucleotidesDVU2523 and DVU2524 are separated by 435 nucleotidesDVU2524 and hynB-2 are separated by 56 nucleotides DVU2521: aroK-2 - shikimate kinase (TIGR), at 2,633,489 to 2,634,031 aroK-2 DVU2522: DVU2522 - hypothetical protein (TIGR), at 2,634,024 to 2,634,626 DVU2522 DVU2523: DVU2523 - lipoprotein, putative (TIGR), at 2,634,656 to 2,635,132 DVU2523 DVU2524: DVU2524 - cytochrome c3, putative (TIGR), at 2,635,568 to 2,636,065 DVU2524 DVU2525: hynB-2 - periplasmic [NiFe] hydrogenase, small subunit, isozyme 2 (TIGR), at 2,636,122 to 2,637,036 hynB-2 Position (kb) 2634 2635 2636Strain fitness (log2 ratio) -1 0 1at 2634.073 kb on - strandat 2634.128 kb on + strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.243 kb on - strand, within DVU2522at 2634.271 kb on - strand, within DVU2522at 2634.278 kb on + strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.286 kb on - strand, within DVU2522at 2634.322 kb on - strand, within DVU2522at 2634.342 kb on - strand, within DVU2522at 2634.371 kb on + strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.468 kb on - strand, within DVU2522at 2634.507 kb on - strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.509 kb on + strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.517 kb on - strand, within DVU2522at 2634.530 kb on + strand, within DVU2522at 2634.579 kb on + strandat 2634.587 kb on - strandat 2634.602 kb on + strandat 2634.610 kb on - strandat 2634.782 kb on + strand, within DVU2523at 2634.800 kb on - strand, within DVU2523at 2634.825 kb on - strand, within DVU2523at 2634.907 kb on - strand, within DVU2523at 2634.971 kb on - strand, within DVU2523at 2635.198 kb on - strandat 2635.198 kb on - strandat 2635.385 kb on - strandat 2635.455 kb on - strandat 2635.468 kb on - strandat 2635.523 kb on - strandat 2635.532 kb on - strandat 2635.581 kb on + strandat 2635.673 kb on + strand, within DVU2524at 2635.836 kb on - strand, within DVU2524at 2635.850 kb on + strand, within DVU2524at 2635.955 kb on + strand, within DVU2524at 2635.962 kb on - strand, within DVU2524at 2635.962 kb on - strand, within DVU2524at 2636.039 kb on - strandat 2636.067 kb on - strandat 2636.106 kb on + strandat 2636.106 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with L-Glutamate (N)
remove
2,634,073 - -0.2
2,634,128 + DVU2522 0.17 -0.8
2,634,243 - DVU2522 0.36 -0.9
2,634,243 - DVU2522 0.36 +1.4
2,634,271 - DVU2522 0.41 -0.4
2,634,278 + DVU2522 0.42 +0.1
2,634,286 - DVU2522 0.43 -0.4
2,634,286 - DVU2522 0.43 +0.6
2,634,322 - DVU2522 0.49 -1.2
2,634,342 - DVU2522 0.53 +0.9
2,634,371 + DVU2522 0.58 +0.6
2,634,468 - DVU2522 0.74 +0.2
2,634,468 - DVU2522 0.74 -0.3
2,634,507 - DVU2522 0.80 -0.6
2,634,509 + DVU2522 0.80 +0.8
2,634,509 + DVU2522 0.80 +0.2
2,634,517 - DVU2522 0.82 -1.4
2,634,517 - DVU2522 0.82 +0.6
2,634,530 + DVU2522 0.84 -0.8
2,634,579 + -0.4
2,634,587 - -0.8
2,634,602 + -1.1
2,634,610 - -0.8
2,634,782 + DVU2523 0.26 -0.3
2,634,800 - DVU2523 0.30 +0.4
2,634,825 - DVU2523 0.35 -0.6
2,634,907 - DVU2523 0.53 -1.4
2,634,971 - DVU2523 0.66 -0.8
2,635,198 - -0.7
2,635,198 - +0.4
2,635,385 - +0.2
2,635,455 - -0.2
2,635,468 - -0.7
2,635,523 - -0.3
2,635,532 - -0.2
2,635,581 + +0.1
2,635,673 + DVU2524 0.21 +0.2
2,635,836 - DVU2524 0.54 -0.3
2,635,850 + DVU2524 0.57 +0.2
2,635,955 + DVU2524 0.78 -0.5
2,635,962 - DVU2524 0.79 -0.0
2,635,962 - DVU2524 0.79 -1.4
2,636,039 - +0.4
2,636,067 - +0.5
2,636,106 + +0.5
2,636,106 - -0.2

Or see this region's nucleotide sequence