Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3783

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3781 and Rru_A3782 are separated by 244 nucleotidesRru_A3782 and Rru_A3783 overlap by 4 nucleotidesRru_A3783 and Rru_A3784 are separated by 46 nucleotidesRru_A3784 and Rru_A3785 are separated by 277 nucleotides Rru_A3781: Rru_A3781 - Initiation factor 2 (NCBI), at 4,329,955 to 4,332,576 _A3781 Rru_A3782: Rru_A3782 - Ribosome-binding factor A (NCBI), at 4,332,821 to 4,333,315 _A3782 Rru_A3783: Rru_A3783 - tRNA pseudouridine synthase B (NCBI), at 4,333,312 to 4,334,238 _A3783 Rru_A3784: Rru_A3784 - Ribosomal protein S15 (NCBI), at 4,334,285 to 4,334,554 _A3784 Rru_A3785: Rru_A3785 - 3' exoribonuclease (NCBI), at 4,334,832 to 4,336,958 _A3785 Position (kb) 4333 4334 4335Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4332.574 kb on + strandat 4332.575 kb on - strandat 4332.799 kb on + strandat 4332.800 kb on - strandat 4333.154 kb on + strand, within Rru_A3782at 4333.154 kb on + strand, within Rru_A3782at 4333.154 kb on + strand, within Rru_A3782at 4333.155 kb on - strand, within Rru_A3782at 4333.155 kb on - strand, within Rru_A3782at 4333.510 kb on + strand, within Rru_A3783at 4333.510 kb on + strand, within Rru_A3783at 4333.510 kb on + strand, within Rru_A3783at 4333.511 kb on - strand, within Rru_A3783at 4333.511 kb on - strand, within Rru_A3783at 4333.511 kb on - strand, within Rru_A3783at 4333.511 kb on - strand, within Rru_A3783at 4333.511 kb on - strand, within Rru_A3783at 4333.684 kb on + strand, within Rru_A3783at 4333.685 kb on - strand, within Rru_A3783at 4333.685 kb on - strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.717 kb on + strand, within Rru_A3783at 4333.718 kb on - strand, within Rru_A3783at 4333.718 kb on - strand, within Rru_A3783at 4333.718 kb on - strand, within Rru_A3783at 4333.718 kb on - strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.846 kb on + strand, within Rru_A3783at 4333.847 kb on - strand, within Rru_A3783at 4333.847 kb on - strand, within Rru_A3783at 4333.848 kb on + strand, within Rru_A3783at 4333.848 kb on + strand, within Rru_A3783at 4333.849 kb on - strand, within Rru_A3783at 4333.849 kb on - strand, within Rru_A3783at 4333.967 kb on + strand, within Rru_A3783at 4334.753 kb on - strandat 4334.753 kb on - strandat 4334.753 kb on - strandat 4334.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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4,332,574 + +0.1
4,332,575 - +0.1
4,332,799 + +0.1
4,332,800 - -2.5
4,333,154 + Rru_A3782 0.67 -1.6
4,333,154 + Rru_A3782 0.67 -0.9
4,333,154 + Rru_A3782 0.67 +0.1
4,333,155 - Rru_A3782 0.67 +0.1
4,333,155 - Rru_A3782 0.67 -0.9
4,333,510 + Rru_A3783 0.21 +0.1
4,333,510 + Rru_A3783 0.21 -0.9
4,333,510 + Rru_A3783 0.21 +0.1
4,333,511 - Rru_A3783 0.21 -3.2
4,333,511 - Rru_A3783 0.21 -2.0
4,333,511 - Rru_A3783 0.21 +0.1
4,333,511 - Rru_A3783 0.21 +0.1
4,333,511 - Rru_A3783 0.21 +0.1
4,333,684 + Rru_A3783 0.40 +0.1
4,333,685 - Rru_A3783 0.40 -2.3
4,333,685 - Rru_A3783 0.40 -2.8
4,333,717 + Rru_A3783 0.44 +0.1
4,333,717 + Rru_A3783 0.44 +0.1
4,333,717 + Rru_A3783 0.44 -1.7
4,333,717 + Rru_A3783 0.44 -0.2
4,333,717 + Rru_A3783 0.44 -4.2
4,333,717 + Rru_A3783 0.44 -1.6
4,333,718 - Rru_A3783 0.44 +0.1
4,333,718 - Rru_A3783 0.44 +0.1
4,333,718 - Rru_A3783 0.44 +0.1
4,333,718 - Rru_A3783 0.44 +0.1
4,333,846 + Rru_A3783 0.58 +0.1
4,333,846 + Rru_A3783 0.58 +0.1
4,333,846 + Rru_A3783 0.58 -2.3
4,333,846 + Rru_A3783 0.58 -3.4
4,333,847 - Rru_A3783 0.58 +0.1
4,333,847 - Rru_A3783 0.58 +0.1
4,333,848 + Rru_A3783 0.58 -0.9
4,333,848 + Rru_A3783 0.58 -2.3
4,333,849 - Rru_A3783 0.58 +0.1
4,333,849 - Rru_A3783 0.58 -1.4
4,333,967 + Rru_A3783 0.71 -2.0
4,334,753 - +0.1
4,334,753 - -0.9
4,334,753 - +0.1
4,334,809 + -0.9

Or see this region's nucleotide sequence