Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2762

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A2761 and Rru_AR0052 are separated by 430 nucleotidesRru_AR0052 and Rru_A2762 are separated by 103 nucleotidesRru_A2762 and Rru_A2763 overlap by 4 nucleotides Rru_A2761: Rru_A2761 - Acyltransferase 3 (NCBI), at 3,193,350 to 3,194,507 _A2761 Rru_AR0052: Rru_AR0052 - tRNA-Phe (NCBI), at 3,194,938 to 3,195,013 _AR0052 Rru_A2762: Rru_A2762 - hypothetical protein (NCBI), at 3,195,117 to 3,195,635 _A2762 Rru_A2763: Rru_A2763 - Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI), at 3,195,632 to 3,198,094 _A2763 Position (kb) 3195 3196Strain fitness (log2 ratio) -2 -1 0 1at 3194.239 kb on - strand, within Rru_A2761at 3194.477 kb on + strandat 3194.477 kb on + strandat 3194.647 kb on + strandat 3194.679 kb on + strandat 3194.680 kb on - strandat 3194.680 kb on - strandat 3194.701 kb on - strandat 3194.701 kb on - strandat 3194.701 kb on - strandat 3194.701 kb on - strandat 3194.701 kb on - strandat 3194.701 kb on - strandat 3194.823 kb on + strandat 3194.823 kb on + strandat 3194.824 kb on - strandat 3194.824 kb on - strandat 3194.824 kb on - strandat 3194.824 kb on - strandat 3194.826 kb on - strandat 3194.873 kb on + strandat 3194.873 kb on + strandat 3194.874 kb on - strandat 3194.874 kb on - strandat 3195.146 kb on + strandat 3195.146 kb on + strandat 3195.171 kb on + strand, within Rru_A2762at 3195.349 kb on + strand, within Rru_A2762at 3195.350 kb on - strand, within Rru_A2762at 3195.350 kb on - strand, within Rru_A2762at 3195.350 kb on - strand, within Rru_A2762at 3195.356 kb on - strand, within Rru_A2762at 3195.570 kb on + strand, within Rru_A2762at 3195.597 kb on + strandat 3195.597 kb on + strandat 3195.598 kb on - strandat 3195.625 kb on - strandat 3195.677 kb on - strandat 3195.841 kb on + strandat 3195.841 kb on + strandat 3195.842 kb on - strandat 3195.842 kb on - strandat 3195.897 kb on + strand, within Rru_A2763at 3195.897 kb on + strand, within Rru_A2763at 3195.897 kb on + strand, within Rru_A2763at 3195.898 kb on - strand, within Rru_A2763at 3195.898 kb on - strand, within Rru_A2763at 3195.913 kb on + strand, within Rru_A2763at 3195.914 kb on - strand, within Rru_A2763at 3195.942 kb on + strand, within Rru_A2763at 3195.942 kb on + strand, within Rru_A2763at 3195.943 kb on - strand, within Rru_A2763at 3195.943 kb on - strand, within Rru_A2763at 3196.431 kb on + strand, within Rru_A2763at 3196.626 kb on + strand, within Rru_A2763at 3196.626 kb on + strand, within Rru_A2763

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
3,194,239 - Rru_A2761 0.77 -0.1
3,194,477 + -0.1
3,194,477 + -0.1
3,194,647 + -0.1
3,194,679 + -0.1
3,194,680 - -0.1
3,194,680 - -0.7
3,194,701 - -0.1
3,194,701 - -1.6
3,194,701 - -0.1
3,194,701 - -0.1
3,194,701 - -0.1
3,194,701 - -1.1
3,194,823 + -0.1
3,194,823 + -0.1
3,194,824 - -0.4
3,194,824 - -0.1
3,194,824 - -1.1
3,194,824 - -0.1
3,194,826 - -0.1
3,194,873 + -1.5
3,194,873 + -1.6
3,194,874 - -0.1
3,194,874 - -2.1
3,195,146 + -0.1
3,195,146 + -0.1
3,195,171 + Rru_A2762 0.10 -1.3
3,195,349 + Rru_A2762 0.45 -0.4
3,195,350 - Rru_A2762 0.45 -1.1
3,195,350 - Rru_A2762 0.45 -0.1
3,195,350 - Rru_A2762 0.45 -0.1
3,195,356 - Rru_A2762 0.46 -0.1
3,195,570 + Rru_A2762 0.87 -0.1
3,195,597 + -0.1
3,195,597 + -1.3
3,195,598 - -0.1
3,195,625 - -0.1
3,195,677 - -0.1
3,195,841 + -0.1
3,195,841 + -0.1
3,195,842 - -0.1
3,195,842 - -0.1
3,195,897 + Rru_A2763 0.11 -0.1
3,195,897 + Rru_A2763 0.11 -0.1
3,195,897 + Rru_A2763 0.11 -0.1
3,195,898 - Rru_A2763 0.11 -1.8
3,195,898 - Rru_A2763 0.11 -0.1
3,195,913 + Rru_A2763 0.11 -0.1
3,195,914 - Rru_A2763 0.11 -0.1
3,195,942 + Rru_A2763 0.13 -0.1
3,195,942 + Rru_A2763 0.13 -0.7
3,195,943 - Rru_A2763 0.13 -1.3
3,195,943 - Rru_A2763 0.13 -0.1
3,196,431 + Rru_A2763 0.32 -0.1
3,196,626 + Rru_A2763 0.40 -0.1
3,196,626 + Rru_A2763 0.40 -0.9

Or see this region's nucleotide sequence