Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1705

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1704 and Rru_A1705 are separated by 177 nucleotidesRru_A1705 and Rru_A1706 overlap by 4 nucleotides Rru_A1704: Rru_A1704 - Serine-type D-Ala-D-Ala carboxypeptidase (NCBI), at 1,994,316 to 1,995,482 _A1704 Rru_A1705: Rru_A1705 - Rare lipoprotein A (NCBI), at 1,995,660 to 1,996,763 _A1705 Rru_A1706: Rru_A1706 - Lytic murein transglycosylase (NCBI), at 1,996,760 to 1,998,124 _A1706 Position (kb) 1995 1996 1997Strain fitness (log2 ratio) -2 -1 0 1at 1995.544 kb on - strandat 1995.877 kb on + strand, within Rru_A1705at 1995.877 kb on + strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1995.878 kb on - strand, within Rru_A1705at 1996.115 kb on - strand, within Rru_A1705at 1996.201 kb on + strand, within Rru_A1705at 1996.201 kb on + strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.202 kb on - strand, within Rru_A1705at 1996.436 kb on + strand, within Rru_A1705at 1996.437 kb on - strand, within Rru_A1705at 1996.537 kb on + strand, within Rru_A1705at 1996.537 kb on + strand, within Rru_A1705at 1996.537 kb on + strand, within Rru_A1705at 1996.537 kb on + strand, within Rru_A1705at 1996.538 kb on - strand, within Rru_A1705at 1996.538 kb on - strand, within Rru_A1705at 1996.543 kb on + strand, within Rru_A1705at 1996.543 kb on + strand, within Rru_A1705at 1996.543 kb on + strand, within Rru_A1705at 1996.544 kb on - strand, within Rru_A1705at 1996.544 kb on - strand, within Rru_A1705at 1996.544 kb on - strand, within Rru_A1705at 1996.544 kb on - strand, within Rru_A1705at 1996.561 kb on + strand, within Rru_A1705at 1996.561 kb on + strand, within Rru_A1705at 1996.561 kb on + strand, within Rru_A1705at 1996.561 kb on + strand, within Rru_A1705at 1996.562 kb on - strand, within Rru_A1705at 1996.582 kb on + strand, within Rru_A1705at 1996.582 kb on + strand, within Rru_A1705at 1996.600 kb on + strand, within Rru_A1705at 1996.601 kb on - strand, within Rru_A1705at 1996.601 kb on - strand, within Rru_A1705at 1996.601 kb on - strand, within Rru_A1705at 1996.601 kb on - strand, within Rru_A1705at 1996.601 kb on - strand, within Rru_A1705at 1996.646 kb on + strand, within Rru_A1705at 1996.647 kb on - strand, within Rru_A1705at 1996.649 kb on + strand, within Rru_A1705at 1996.649 kb on + strand, within Rru_A1705at 1996.650 kb on - strand, within Rru_A1705at 1996.809 kb on + strandat 1996.809 kb on + strandat 1996.810 kb on - strandat 1996.810 kb on - strandat 1996.843 kb on - strandat 1996.843 kb on - strandat 1996.902 kb on + strand, within Rru_A1706at 1996.902 kb on + strand, within Rru_A1706at 1996.903 kb on - strand, within Rru_A1706at 1997.037 kb on + strand, within Rru_A1706at 1997.037 kb on + strand, within Rru_A1706at 1997.037 kb on + strand, within Rru_A1706at 1997.038 kb on - strand, within Rru_A1706at 1997.038 kb on - strand, within Rru_A1706at 1997.038 kb on - strand, within Rru_A1706at 1997.038 kb on - strand, within Rru_A1706at 1997.038 kb on - strand, within Rru_A1706at 1997.066 kb on - strand, within Rru_A1706at 1997.073 kb on + strand, within Rru_A1706at 1997.073 kb on + strand, within Rru_A1706at 1997.073 kb on + strand, within Rru_A1706at 1997.073 kb on + strand, within Rru_A1706at 1997.073 kb on + strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.074 kb on - strand, within Rru_A1706at 1997.313 kb on + strand, within Rru_A1706at 1997.313 kb on + strand, within Rru_A1706at 1997.313 kb on + strand, within Rru_A1706at 1997.313 kb on + strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.314 kb on - strand, within Rru_A1706at 1997.379 kb on + strand, within Rru_A1706at 1997.379 kb on + strand, within Rru_A1706at 1997.379 kb on + strand, within Rru_A1706at 1997.380 kb on - strand, within Rru_A1706at 1997.646 kb on + strand, within Rru_A1706at 1997.646 kb on + strand, within Rru_A1706at 1997.647 kb on - strand, within Rru_A1706at 1997.647 kb on - strand, within Rru_A1706at 1997.647 kb on - strand, within Rru_A1706at 1997.739 kb on + strand, within Rru_A1706

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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1,995,544 - +0.1
1,995,877 + Rru_A1705 0.20 +0.1
1,995,877 + Rru_A1705 0.20 +0.1
1,995,878 - Rru_A1705 0.20 +0.1
1,995,878 - Rru_A1705 0.20 -1.4
1,995,878 - Rru_A1705 0.20 +0.1
1,996,115 - Rru_A1705 0.41 +0.1
1,996,201 + Rru_A1705 0.49 -0.9
1,996,201 + Rru_A1705 0.49 +0.1
1,996,202 - Rru_A1705 0.49 -0.6
1,996,202 - Rru_A1705 0.49 -0.9
1,996,202 - Rru_A1705 0.49 -0.7
1,996,436 + Rru_A1705 0.70 +0.1
1,996,437 - Rru_A1705 0.70 +0.1
1,996,537 + Rru_A1705 0.79 +0.7
1,996,537 + Rru_A1705 0.79 -1.3
1,996,537 + Rru_A1705 0.79 -1.2
1,996,537 + Rru_A1705 0.79 +0.1
1,996,538 - Rru_A1705 0.80 +0.1
1,996,538 - Rru_A1705 0.80 +0.1
1,996,543 + Rru_A1705 0.80 +0.1
1,996,543 + Rru_A1705 0.80 -0.9
1,996,543 + Rru_A1705 0.80 +0.1
1,996,544 - Rru_A1705 0.80 -0.4
1,996,544 - Rru_A1705 0.80 +0.1
1,996,544 - Rru_A1705 0.80 +0.1
1,996,544 - Rru_A1705 0.80 -0.8
1,996,561 + Rru_A1705 0.82 +0.1
1,996,561 + Rru_A1705 0.82 +1.1
1,996,561 + Rru_A1705 0.82 +0.1
1,996,561 + Rru_A1705 0.82 +0.1
1,996,562 - Rru_A1705 0.82 +0.1
1,996,582 + Rru_A1705 0.84 +0.1
1,996,582 + Rru_A1705 0.84 +0.1
1,996,600 + Rru_A1705 0.85 +0.1
1,996,601 - Rru_A1705 0.85 +0.5
1,996,601 - Rru_A1705 0.85 +0.1
1,996,601 - Rru_A1705 0.85 +0.1
1,996,601 - Rru_A1705 0.85 +0.1
1,996,601 - Rru_A1705 0.85 +0.1
1,996,646 + Rru_A1705 0.89 -1.9
1,996,647 - Rru_A1705 0.89 +0.1
1,996,649 + Rru_A1705 0.90 +0.1
1,996,649 + Rru_A1705 0.90 +0.1
1,996,650 - Rru_A1705 0.90 +0.1
1,996,809 + +0.1
1,996,809 + +0.1
1,996,810 - -2.3
1,996,810 - +0.1
1,996,843 - +0.1
1,996,843 - -1.8
1,996,902 + Rru_A1706 0.10 +0.1
1,996,902 + Rru_A1706 0.10 +0.1
1,996,903 - Rru_A1706 0.10 +0.1
1,997,037 + Rru_A1706 0.20 +0.1
1,997,037 + Rru_A1706 0.20 -0.9
1,997,037 + Rru_A1706 0.20 +0.1
1,997,038 - Rru_A1706 0.20 -0.9
1,997,038 - Rru_A1706 0.20 +0.1
1,997,038 - Rru_A1706 0.20 +0.1
1,997,038 - Rru_A1706 0.20 +0.1
1,997,038 - Rru_A1706 0.20 +0.1
1,997,066 - Rru_A1706 0.22 +0.1
1,997,073 + Rru_A1706 0.23 +0.1
1,997,073 + Rru_A1706 0.23 -0.0
1,997,073 + Rru_A1706 0.23 +0.1
1,997,073 + Rru_A1706 0.23 +0.1
1,997,073 + Rru_A1706 0.23 +0.1
1,997,074 - Rru_A1706 0.23 -2.1
1,997,074 - Rru_A1706 0.23 +0.1
1,997,074 - Rru_A1706 0.23 -1.3
1,997,074 - Rru_A1706 0.23 +0.1
1,997,074 - Rru_A1706 0.23 +0.1
1,997,074 - Rru_A1706 0.23 +0.1
1,997,313 + Rru_A1706 0.41 +0.1
1,997,313 + Rru_A1706 0.41 +0.1
1,997,313 + Rru_A1706 0.41 +0.1
1,997,313 + Rru_A1706 0.41 +0.1
1,997,314 - Rru_A1706 0.41 -1.1
1,997,314 - Rru_A1706 0.41 +0.1
1,997,314 - Rru_A1706 0.41 -1.5
1,997,314 - Rru_A1706 0.41 +0.1
1,997,314 - Rru_A1706 0.41 +0.1
1,997,314 - Rru_A1706 0.41 +0.1
1,997,379 + Rru_A1706 0.45 +0.1
1,997,379 + Rru_A1706 0.45 +0.1
1,997,379 + Rru_A1706 0.45 +0.1
1,997,380 - Rru_A1706 0.45 +0.1
1,997,646 + Rru_A1706 0.65 -0.5
1,997,646 + Rru_A1706 0.65 -0.9
1,997,647 - Rru_A1706 0.65 -0.9
1,997,647 - Rru_A1706 0.65 -0.6
1,997,647 - Rru_A1706 0.65 +0.1
1,997,739 + Rru_A1706 0.72 -0.9

Or see this region's nucleotide sequence