Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1636

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1635 and Rru_A1636 overlap by 4 nucleotidesRru_A1636 and Rru_A1637 overlap by 1 nucleotidesRru_A1637 and Rru_A1638 overlap by 1 nucleotides Rru_A1635: Rru_A1635 - NADH dehydrogenase (quinone) (NCBI), at 1,926,486 to 1,927,994 _A1635 Rru_A1636: Rru_A1636 - NADH-ubiquinone oxidoreductase, chain 4L (NCBI), at 1,927,991 to 1,928,356 _A1636 Rru_A1637: Rru_A1637 - Na+/H+ antiporter MnhB subunit-related protein (NCBI), at 1,928,356 to 1,928,772 _A1637 Rru_A1638: Rru_A1638 - putative multicomponent Na+-H+ antiporter subunit A (NCBI), at 1,928,772 to 1,929,371 _A1638 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1927.055 kb on - strand, within Rru_A1635at 1927.222 kb on + strand, within Rru_A1635at 1927.222 kb on + strand, within Rru_A1635at 1927.223 kb on - strand, within Rru_A1635at 1927.223 kb on - strand, within Rru_A1635at 1927.223 kb on - strand, within Rru_A1635at 1927.279 kb on + strand, within Rru_A1635at 1927.279 kb on + strand, within Rru_A1635at 1927.280 kb on - strand, within Rru_A1635at 1927.280 kb on - strand, within Rru_A1635at 1927.280 kb on - strand, within Rru_A1635at 1927.286 kb on - strand, within Rru_A1635at 1927.304 kb on + strand, within Rru_A1635at 1927.304 kb on + strand, within Rru_A1635at 1927.304 kb on + strand, within Rru_A1635at 1927.304 kb on + strand, within Rru_A1635at 1927.305 kb on - strand, within Rru_A1635at 1927.305 kb on - strand, within Rru_A1635at 1927.305 kb on - strand, within Rru_A1635at 1927.305 kb on - strand, within Rru_A1635at 1927.347 kb on + strand, within Rru_A1635at 1927.442 kb on - strand, within Rru_A1635at 1927.442 kb on - strand, within Rru_A1635at 1927.465 kb on + strand, within Rru_A1635at 1927.465 kb on + strand, within Rru_A1635at 1927.465 kb on + strand, within Rru_A1635at 1927.466 kb on - strand, within Rru_A1635at 1927.466 kb on - strand, within Rru_A1635at 1927.466 kb on - strand, within Rru_A1635at 1927.466 kb on - strand, within Rru_A1635at 1927.498 kb on + strand, within Rru_A1635at 1927.498 kb on + strand, within Rru_A1635at 1927.498 kb on + strand, within Rru_A1635at 1927.499 kb on - strand, within Rru_A1635at 1927.499 kb on - strand, within Rru_A1635at 1927.504 kb on + strand, within Rru_A1635at 1927.505 kb on - strand, within Rru_A1635at 1927.505 kb on - strand, within Rru_A1635at 1927.513 kb on + strand, within Rru_A1635at 1927.513 kb on + strand, within Rru_A1635at 1927.553 kb on - strand, within Rru_A1635at 1927.569 kb on + strand, within Rru_A1635at 1927.816 kb on + strand, within Rru_A1635at 1927.817 kb on - strand, within Rru_A1635at 1927.817 kb on - strand, within Rru_A1635at 1928.211 kb on + strand, within Rru_A1636at 1928.211 kb on + strand, within Rru_A1636at 1928.211 kb on + strand, within Rru_A1636at 1928.212 kb on - strand, within Rru_A1636at 1928.212 kb on - strand, within Rru_A1636at 1928.212 kb on - strand, within Rru_A1636at 1928.212 kb on - strand, within Rru_A1636at 1928.212 kb on - strand, within Rru_A1636at 1928.329 kb on + strandat 1928.379 kb on + strandat 1928.379 kb on + strandat 1928.487 kb on - strand, within Rru_A1637at 1928.537 kb on + strand, within Rru_A1637at 1928.537 kb on + strand, within Rru_A1637at 1928.537 kb on + strand, within Rru_A1637at 1928.537 kb on + strand, within Rru_A1637at 1928.537 kb on + strand, within Rru_A1637at 1928.538 kb on - strand, within Rru_A1637at 1928.538 kb on - strand, within Rru_A1637at 1928.538 kb on - strand, within Rru_A1637at 1928.613 kb on - strand, within Rru_A1637at 1928.624 kb on + strand, within Rru_A1637at 1928.624 kb on + strand, within Rru_A1637at 1928.702 kb on + strand, within Rru_A1637at 1928.702 kb on + strand, within Rru_A1637at 1928.702 kb on + strand, within Rru_A1637at 1928.702 kb on + strand, within Rru_A1637at 1928.702 kb on + strand, within Rru_A1637at 1928.703 kb on - strand, within Rru_A1637at 1928.703 kb on - strand, within Rru_A1637at 1928.703 kb on - strand, within Rru_A1637at 1928.731 kb on - strandat 1928.910 kb on - strand, within Rru_A1638at 1928.948 kb on + strand, within Rru_A1638at 1928.949 kb on - strand, within Rru_A1638at 1928.986 kb on + strand, within Rru_A1638at 1928.986 kb on + strand, within Rru_A1638at 1928.986 kb on + strand, within Rru_A1638at 1928.986 kb on + strand, within Rru_A1638at 1928.986 kb on + strand, within Rru_A1638at 1928.987 kb on - strand, within Rru_A1638at 1928.987 kb on - strand, within Rru_A1638

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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1,927,055 - Rru_A1635 0.38 +0.0
1,927,222 + Rru_A1635 0.49 +0.0
1,927,222 + Rru_A1635 0.49 +0.0
1,927,223 - Rru_A1635 0.49 +0.0
1,927,223 - Rru_A1635 0.49 +0.0
1,927,223 - Rru_A1635 0.49 -1.0
1,927,279 + Rru_A1635 0.53 +0.0
1,927,279 + Rru_A1635 0.53 +0.0
1,927,280 - Rru_A1635 0.53 +0.0
1,927,280 - Rru_A1635 0.53 +0.0
1,927,280 - Rru_A1635 0.53 +0.0
1,927,286 - Rru_A1635 0.53 +0.0
1,927,304 + Rru_A1635 0.54 +0.0
1,927,304 + Rru_A1635 0.54 +0.0
1,927,304 + Rru_A1635 0.54 -0.8
1,927,304 + Rru_A1635 0.54 +0.0
1,927,305 - Rru_A1635 0.54 +0.0
1,927,305 - Rru_A1635 0.54 +0.0
1,927,305 - Rru_A1635 0.54 +0.0
1,927,305 - Rru_A1635 0.54 +0.0
1,927,347 + Rru_A1635 0.57 -2.0
1,927,442 - Rru_A1635 0.63 +0.0
1,927,442 - Rru_A1635 0.63 +0.0
1,927,465 + Rru_A1635 0.65 +0.0
1,927,465 + Rru_A1635 0.65 -1.8
1,927,465 + Rru_A1635 0.65 +0.0
1,927,466 - Rru_A1635 0.65 +0.0
1,927,466 - Rru_A1635 0.65 +0.0
1,927,466 - Rru_A1635 0.65 +0.0
1,927,466 - Rru_A1635 0.65 +0.0
1,927,498 + Rru_A1635 0.67 +0.0
1,927,498 + Rru_A1635 0.67 -1.4
1,927,498 + Rru_A1635 0.67 +0.0
1,927,499 - Rru_A1635 0.67 -1.6
1,927,499 - Rru_A1635 0.67 +0.0
1,927,504 + Rru_A1635 0.67 +0.0
1,927,505 - Rru_A1635 0.68 +0.0
1,927,505 - Rru_A1635 0.68 +0.0
1,927,513 + Rru_A1635 0.68 +0.0
1,927,513 + Rru_A1635 0.68 +0.0
1,927,553 - Rru_A1635 0.71 -1.0
1,927,569 + Rru_A1635 0.72 -0.4
1,927,816 + Rru_A1635 0.88 +0.0
1,927,817 - Rru_A1635 0.88 +0.0
1,927,817 - Rru_A1635 0.88 +0.0
1,928,211 + Rru_A1636 0.60 +0.0
1,928,211 + Rru_A1636 0.60 +0.0
1,928,211 + Rru_A1636 0.60 -1.0
1,928,212 - Rru_A1636 0.60 -1.0
1,928,212 - Rru_A1636 0.60 +0.0
1,928,212 - Rru_A1636 0.60 +0.0
1,928,212 - Rru_A1636 0.60 -3.8
1,928,212 - Rru_A1636 0.60 +0.0
1,928,329 + +0.0
1,928,379 + +0.0
1,928,379 + +0.0
1,928,487 - Rru_A1637 0.31 -2.5
1,928,537 + Rru_A1637 0.43 -1.0
1,928,537 + Rru_A1637 0.43 +0.0
1,928,537 + Rru_A1637 0.43 +0.0
1,928,537 + Rru_A1637 0.43 -1.8
1,928,537 + Rru_A1637 0.43 +0.0
1,928,538 - Rru_A1637 0.44 +0.0
1,928,538 - Rru_A1637 0.44 -1.7
1,928,538 - Rru_A1637 0.44 -1.0
1,928,613 - Rru_A1637 0.62 +0.0
1,928,624 + Rru_A1637 0.64 +0.0
1,928,624 + Rru_A1637 0.64 +0.0
1,928,702 + Rru_A1637 0.83 -1.0
1,928,702 + Rru_A1637 0.83 -1.0
1,928,702 + Rru_A1637 0.83 +0.0
1,928,702 + Rru_A1637 0.83 -1.0
1,928,702 + Rru_A1637 0.83 +0.0
1,928,703 - Rru_A1637 0.83 +0.0
1,928,703 - Rru_A1637 0.83 +0.0
1,928,703 - Rru_A1637 0.83 +0.0
1,928,731 - -1.7
1,928,910 - Rru_A1638 0.23 -1.0
1,928,948 + Rru_A1638 0.29 -1.2
1,928,949 - Rru_A1638 0.29 +0.0
1,928,986 + Rru_A1638 0.36 +0.0
1,928,986 + Rru_A1638 0.36 +0.0
1,928,986 + Rru_A1638 0.36 +0.0
1,928,986 + Rru_A1638 0.36 -1.8
1,928,986 + Rru_A1638 0.36 +0.0
1,928,987 - Rru_A1638 0.36 +0.0
1,928,987 - Rru_A1638 0.36 +0.0

Or see this region's nucleotide sequence