Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0969

Experiment: L-Malic Acid (C) with ammonium chloride; no light

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A0967 and Rru_A0968 overlap by 4 nucleotidesRru_A0968 and Rru_A0969 overlap by 4 nucleotidesRru_A0969 and Rru_A0970 are separated by 44 nucleotidesRru_A0970 and Rru_A0971 overlap by 4 nucleotides Rru_A0967: Rru_A0967 - Carbon-monoxide dehydrogenase (NCBI), at 1,152,216 to 1,153,013 _A0967 Rru_A0968: Rru_A0968 - ATPase associated with various cellular activities, AAA_5 (NCBI), at 1,153,010 to 1,153,954 _A0968 Rru_A0969: Rru_A0969 - VWA containing CoxE-like (NCBI), at 1,153,951 to 1,155,216 _A0969 Rru_A0970: Rru_A0970 - hypothetical protein (NCBI), at 1,155,261 to 1,155,911 _A0970 Rru_A0971: Rru_A0971 - hypothetical protein (NCBI), at 1,155,908 to 1,157,548 _A0971 Position (kb) 1153 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1at 1153.098 kb on - strandat 1153.250 kb on + strand, within Rru_A0968at 1153.250 kb on + strand, within Rru_A0968at 1153.250 kb on + strand, within Rru_A0968at 1153.250 kb on + strand, within Rru_A0968at 1153.251 kb on - strand, within Rru_A0968at 1153.251 kb on - strand, within Rru_A0968at 1153.251 kb on - strand, within Rru_A0968at 1153.251 kb on - strand, within Rru_A0968at 1153.251 kb on - strand, within Rru_A0968at 1153.281 kb on - strand, within Rru_A0968at 1153.622 kb on + strand, within Rru_A0968at 1153.623 kb on - strand, within Rru_A0968at 1153.623 kb on - strand, within Rru_A0968at 1153.810 kb on + strand, within Rru_A0968at 1153.810 kb on + strand, within Rru_A0968at 1153.811 kb on - strand, within Rru_A0968at 1153.811 kb on - strand, within Rru_A0968at 1153.811 kb on - strand, within Rru_A0968at 1153.865 kb on + strandat 1153.865 kb on + strandat 1153.865 kb on + strandat 1153.866 kb on - strandat 1153.866 kb on - strandat 1153.866 kb on - strandat 1154.022 kb on + strandat 1154.137 kb on + strand, within Rru_A0969at 1154.138 kb on - strand, within Rru_A0969at 1154.138 kb on - strand, within Rru_A0969at 1154.138 kb on - strand, within Rru_A0969at 1154.450 kb on - strand, within Rru_A0969at 1154.674 kb on + strand, within Rru_A0969at 1155.031 kb on + strand, within Rru_A0969at 1155.105 kb on + strandat 1155.106 kb on - strandat 1155.106 kb on - strandat 1155.106 kb on - strandat 1155.215 kb on - strandat 1155.215 kb on - strandat 1155.400 kb on - strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.693 kb on + strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970at 1155.694 kb on - strand, within Rru_A0970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
remove
1,153,098 - +0.1
1,153,250 + Rru_A0968 0.25 -1.8
1,153,250 + Rru_A0968 0.25 -1.6
1,153,250 + Rru_A0968 0.25 -0.8
1,153,250 + Rru_A0968 0.25 +0.1
1,153,251 - Rru_A0968 0.26 +0.1
1,153,251 - Rru_A0968 0.26 -0.9
1,153,251 - Rru_A0968 0.26 +0.1
1,153,251 - Rru_A0968 0.26 +0.1
1,153,251 - Rru_A0968 0.26 +0.1
1,153,281 - Rru_A0968 0.29 +0.1
1,153,622 + Rru_A0968 0.65 +0.1
1,153,623 - Rru_A0968 0.65 +0.1
1,153,623 - Rru_A0968 0.65 +0.1
1,153,810 + Rru_A0968 0.85 +0.1
1,153,810 + Rru_A0968 0.85 +0.1
1,153,811 - Rru_A0968 0.85 -0.9
1,153,811 - Rru_A0968 0.85 +0.1
1,153,811 - Rru_A0968 0.85 -2.2
1,153,865 + +0.1
1,153,865 + +0.1
1,153,865 + +0.1
1,153,866 - -1.2
1,153,866 - +0.1
1,153,866 - +0.1
1,154,022 + -0.9
1,154,137 + Rru_A0969 0.15 -0.9
1,154,138 - Rru_A0969 0.15 -0.2
1,154,138 - Rru_A0969 0.15 +0.3
1,154,138 - Rru_A0969 0.15 +0.1
1,154,450 - Rru_A0969 0.39 -1.5
1,154,674 + Rru_A0969 0.57 -0.9
1,155,031 + Rru_A0969 0.85 +0.1
1,155,105 + +0.1
1,155,106 - -0.9
1,155,106 - +0.1
1,155,106 - +0.1
1,155,215 - -1.2
1,155,215 - +0.1
1,155,400 - Rru_A0970 0.21 +0.1
1,155,693 + Rru_A0970 0.66 +0.1
1,155,693 + Rru_A0970 0.66 +0.1
1,155,693 + Rru_A0970 0.66 -1.9
1,155,693 + Rru_A0970 0.66 -1.4
1,155,694 - Rru_A0970 0.67 -1.1
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 -1.3
1,155,694 - Rru_A0970 0.67 -1.4
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 +0.1
1,155,694 - Rru_A0970 0.67 -1.5

Or see this region's nucleotide sequence