Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_AR0021 and Rru_AR0022 are separated by 118 nucleotides Rru_AR0022 and Rru_AR0023 are separated by 95 nucleotides Rru_AR0023 and Rru_A0771 are separated by 573 nucleotides Rru_A0771 and Rru_A0772 are separated by 232 nucleotides
Rru_AR0021: Rru_AR0021 - 23S ribosomal RNA (NCBI), at 913,637 to 916,394
_AR0021
Rru_AR0022: Rru_AR0022 - 5S ribosomal RNA (NCBI), at 916,513 to 916,627
_AR0022
Rru_AR0023: Rru_AR0023 - tRNA-Met (NCBI), at 916,723 to 916,799
_AR0023
Rru_A0771: Rru_A0771 - hypothetical protein (NCBI), at 917,373 to 921,860
_A0771
Rru_A0772: Rru_A0772 - Oxidoreductase/nitrogenase, component 1 (NCBI), at 922,093 to 923,418
_A0772
Position (kb) 917
918
919
920
921
922 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 916.471 kb on - strand at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.612 kb on + strand, within Rru_AR0022 at 916.643 kb on + strand at 916.689 kb on - strand at 916.805 kb on + strand at 916.805 kb on + strand at 916.806 kb on - strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.851 kb on + strand at 916.852 kb on - strand at 916.854 kb on - strand at 916.854 kb on - strand at 916.871 kb on + strand at 916.880 kb on + strand at 916.880 kb on + strand at 916.881 kb on - strand at 916.881 kb on - strand at 916.881 kb on - strand at 916.979 kb on + strand at 916.980 kb on - strand at 916.989 kb on - strand at 917.052 kb on - strand at 917.116 kb on - strand at 917.117 kb on + strand at 917.257 kb on + strand at 917.266 kb on - strand at 917.309 kb on + strand at 917.309 kb on + strand at 917.343 kb on - strand at 917.498 kb on + strand at 917.499 kb on - strand at 917.553 kb on + strand at 917.554 kb on - strand at 917.592 kb on + strand at 917.609 kb on + strand at 917.609 kb on + strand at 917.609 kb on + strand at 917.628 kb on + strand at 917.629 kb on - strand at 917.647 kb on + strand at 917.669 kb on + strand at 917.669 kb on + strand at 917.670 kb on - strand at 917.672 kb on + strand at 917.673 kb on - strand at 917.809 kb on + strand at 917.809 kb on + strand at 917.809 kb on + strand at 917.809 kb on + strand at 917.809 kb on + strand at 917.809 kb on + strand at 917.810 kb on - strand at 917.837 kb on - strand, within Rru_A0771 at 917.837 kb on - strand, within Rru_A0771 at 917.966 kb on + strand, within Rru_A0771 at 918.038 kb on - strand, within Rru_A0771 at 918.038 kb on - strand, within Rru_A0771 at 918.038 kb on - strand, within Rru_A0771 at 918.170 kb on + strand, within Rru_A0771 at 918.170 kb on + strand, within Rru_A0771 at 918.247 kb on + strand, within Rru_A0771 at 918.301 kb on + strand, within Rru_A0771 at 918.302 kb on - strand, within Rru_A0771 at 918.302 kb on - strand, within Rru_A0771 at 918.428 kb on + strand, within Rru_A0771 at 918.428 kb on + strand, within Rru_A0771 at 918.493 kb on + strand, within Rru_A0771 at 918.497 kb on - strand, within Rru_A0771 at 918.543 kb on - strand, within Rru_A0771 at 918.602 kb on + strand, within Rru_A0771 at 918.603 kb on - strand, within Rru_A0771 at 918.636 kb on - strand, within Rru_A0771 at 918.707 kb on - strand, within Rru_A0771 at 918.720 kb on - strand, within Rru_A0771 at 918.751 kb on - strand, within Rru_A0771 at 918.779 kb on + strand, within Rru_A0771 at 918.779 kb on + strand, within Rru_A0771 at 918.796 kb on + strand, within Rru_A0771 at 918.797 kb on - strand, within Rru_A0771 at 918.819 kb on + strand, within Rru_A0771 at 918.909 kb on - strand, within Rru_A0771 at 919.007 kb on + strand, within Rru_A0771 at 919.025 kb on + strand, within Rru_A0771 at 919.026 kb on - strand, within Rru_A0771 at 919.072 kb on + strand, within Rru_A0771 at 919.072 kb on + strand, within Rru_A0771 at 919.072 kb on + strand, within Rru_A0771 at 919.072 kb on + strand, within Rru_A0771 at 919.073 kb on - strand, within Rru_A0771 at 919.073 kb on - strand, within Rru_A0771 at 919.073 kb on - strand, within Rru_A0771 at 919.300 kb on + strand, within Rru_A0771 at 919.301 kb on - strand, within Rru_A0771 at 919.301 kb on - strand, within Rru_A0771 at 919.301 kb on - strand, within Rru_A0771 at 919.301 kb on - strand, within Rru_A0771 at 919.372 kb on + strand, within Rru_A0771 at 919.373 kb on - strand, within Rru_A0771 at 919.489 kb on + strand, within Rru_A0771 at 919.489 kb on + strand, within Rru_A0771 at 919.495 kb on - strand, within Rru_A0771 at 919.580 kb on + strand, within Rru_A0771 at 919.581 kb on - strand, within Rru_A0771 at 919.674 kb on + strand, within Rru_A0771 at 919.675 kb on - strand, within Rru_A0771 at 919.675 kb on - strand, within Rru_A0771 at 919.675 kb on - strand, within Rru_A0771 at 919.733 kb on + strand, within Rru_A0771 at 919.843 kb on + strand, within Rru_A0771 at 919.950 kb on - strand, within Rru_A0771 at 919.950 kb on - strand, within Rru_A0771 at 919.977 kb on - strand, within Rru_A0771 at 919.999 kb on + strand, within Rru_A0771 at 919.999 kb on + strand, within Rru_A0771 at 920.000 kb on - strand, within Rru_A0771 at 920.000 kb on - strand, within Rru_A0771 at 920.000 kb on - strand, within Rru_A0771 at 920.041 kb on + strand, within Rru_A0771 at 920.042 kb on - strand, within Rru_A0771 at 920.042 kb on - strand, within Rru_A0771 at 920.249 kb on - strand, within Rru_A0771 at 920.293 kb on + strand, within Rru_A0771 at 920.371 kb on + strand, within Rru_A0771 at 920.371 kb on + strand, within Rru_A0771 at 920.372 kb on - strand, within Rru_A0771 at 920.372 kb on - strand, within Rru_A0771 at 920.372 kb on - strand, within Rru_A0771 at 920.372 kb on - strand, within Rru_A0771 at 920.565 kb on + strand, within Rru_A0771 at 920.565 kb on + strand, within Rru_A0771 at 920.566 kb on - strand, within Rru_A0771 at 920.566 kb on - strand, within Rru_A0771 at 920.729 kb on + strand, within Rru_A0771 at 920.729 kb on + strand, within Rru_A0771 at 920.730 kb on - strand, within Rru_A0771 at 920.792 kb on + strand, within Rru_A0771 at 920.793 kb on - strand, within Rru_A0771 at 920.893 kb on - strand, within Rru_A0771 at 921.017 kb on + strand, within Rru_A0771 at 921.018 kb on - strand, within Rru_A0771 at 921.038 kb on + strand, within Rru_A0771 at 921.038 kb on + strand, within Rru_A0771 at 921.038 kb on + strand, within Rru_A0771 at 921.038 kb on + strand, within Rru_A0771 at 921.039 kb on - strand, within Rru_A0771 at 921.067 kb on + strand, within Rru_A0771 at 921.142 kb on - strand, within Rru_A0771 at 921.156 kb on - strand, within Rru_A0771 at 921.156 kb on - strand, within Rru_A0771 at 921.236 kb on + strand, within Rru_A0771 at 921.359 kb on - strand, within Rru_A0771 at 921.363 kb on - strand, within Rru_A0771 at 921.366 kb on - strand, within Rru_A0771 at 921.436 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.448 kb on + strand at 921.449 kb on - strand at 921.449 kb on - strand at 921.598 kb on + strand at 921.599 kb on - strand at 921.599 kb on - strand at 921.599 kb on - strand at 921.769 kb on + strand at 921.770 kb on - strand at 921.863 kb on - strand at 921.880 kb on - strand at 921.976 kb on + strand at 922.141 kb on + strand at 922.163 kb on + strand at 922.164 kb on - strand at 922.164 kb on - strand at 922.164 kb on - strand at 922.373 kb on + strand, within Rru_A0772 at 922.374 kb on - strand, within Rru_A0772 at 922.562 kb on + strand, within Rru_A0772 at 922.571 kb on + strand, within Rru_A0772 at 922.571 kb on + strand, within Rru_A0772 at 922.572 kb on - strand, within Rru_A0772 at 922.572 kb on - strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.574 kb on + strand, within Rru_A0772 at 922.575 kb on - strand, within Rru_A0772 at 922.770 kb on + strand, within Rru_A0772 at 922.834 kb on - strand, within Rru_A0772
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 916,471 - +0.1 916,612 + Rru_AR0022 0.86 +0.1 916,612 + Rru_AR0022 0.86 +0.1 916,612 + Rru_AR0022 0.86 +0.1 916,612 + Rru_AR0022 0.86 +0.1 916,612 + Rru_AR0022 0.86 +0.1 916,612 + Rru_AR0022 0.86 -0.9 916,643 + +0.1 916,689 - +1.6 916,805 + -0.8 916,805 + -1.9 916,806 - +0.1 916,851 + -0.9 916,851 + -0.9 916,851 + +0.1 916,851 + +0.1 916,852 - +0.1 916,854 - +0.1 916,854 - -1.4 916,871 + -1.3 916,880 + -0.8 916,880 + -0.9 916,881 - +0.1 916,881 - +0.1 916,881 - +0.1 916,979 + +0.1 916,980 - -1.4 916,989 - +0.1 917,052 - +0.1 917,116 - -1.9 917,117 + -1.2 917,257 + +0.1 917,266 - -1.5 917,309 + +0.1 917,309 + +0.1 917,343 - +0.1 917,498 + -1.1 917,499 - -0.9 917,553 + +0.1 917,554 - +0.1 917,592 + +0.1 917,609 + -1.4 917,609 + +0.1 917,609 + +0.1 917,628 + +0.1 917,629 - +0.1 917,647 + +0.1 917,669 + +0.1 917,669 + +0.1 917,670 - +0.1 917,672 + +0.1 917,673 - +0.1 917,809 + -1.3 917,809 + +0.1 917,809 + +0.1 917,809 + +0.1 917,809 + +0.1 917,809 + -1.6 917,810 - +0.1 917,837 - Rru_A0771 0.10 +0.1 917,837 - Rru_A0771 0.10 +0.1 917,966 + Rru_A0771 0.13 +0.1 918,038 - Rru_A0771 0.15 -0.9 918,038 - Rru_A0771 0.15 +0.1 918,038 - Rru_A0771 0.15 +0.1 918,170 + Rru_A0771 0.18 +0.1 918,170 + Rru_A0771 0.18 +1.6 918,247 + Rru_A0771 0.19 +0.1 918,301 + Rru_A0771 0.21 +0.1 918,302 - Rru_A0771 0.21 +0.1 918,302 - Rru_A0771 0.21 -1.5 918,428 + Rru_A0771 0.24 -1.9 918,428 + Rru_A0771 0.24 +0.1 918,493 + Rru_A0771 0.25 +0.1 918,497 - Rru_A0771 0.25 -1.1 918,543 - Rru_A0771 0.26 -1.1 918,602 + Rru_A0771 0.27 -0.9 918,603 - Rru_A0771 0.27 +0.1 918,636 - Rru_A0771 0.28 +0.1 918,707 - Rru_A0771 0.30 -1.9 918,720 - Rru_A0771 0.30 -1.1 918,751 - Rru_A0771 0.31 +0.1 918,779 + Rru_A0771 0.31 +0.1 918,779 + Rru_A0771 0.31 +0.1 918,796 + Rru_A0771 0.32 +0.1 918,797 - Rru_A0771 0.32 +0.1 918,819 + Rru_A0771 0.32 +0.1 918,909 - Rru_A0771 0.34 +0.1 919,007 + Rru_A0771 0.36 +0.1 919,025 + Rru_A0771 0.37 +0.1 919,026 - Rru_A0771 0.37 +0.1 919,072 + Rru_A0771 0.38 +0.1 919,072 + Rru_A0771 0.38 -1.7 919,072 + Rru_A0771 0.38 -1.0 919,072 + Rru_A0771 0.38 +0.1 919,073 - Rru_A0771 0.38 +0.1 919,073 - Rru_A0771 0.38 -1.4 919,073 - Rru_A0771 0.38 -1.6 919,300 + Rru_A0771 0.43 -1.7 919,301 - Rru_A0771 0.43 -0.8 919,301 - Rru_A0771 0.43 -1.0 919,301 - Rru_A0771 0.43 +0.1 919,301 - Rru_A0771 0.43 +0.1 919,372 + Rru_A0771 0.45 +0.1 919,373 - Rru_A0771 0.45 +0.1 919,489 + Rru_A0771 0.47 +0.1 919,489 + Rru_A0771 0.47 -0.9 919,495 - Rru_A0771 0.47 -1.5 919,580 + Rru_A0771 0.49 -2.5 919,581 - Rru_A0771 0.49 +0.1 919,674 + Rru_A0771 0.51 +0.1 919,675 - Rru_A0771 0.51 +0.1 919,675 - Rru_A0771 0.51 -0.9 919,675 - Rru_A0771 0.51 -0.9 919,733 + Rru_A0771 0.53 +0.1 919,843 + Rru_A0771 0.55 +0.1 919,950 - Rru_A0771 0.57 +0.1 919,950 - Rru_A0771 0.57 -1.1 919,977 - Rru_A0771 0.58 +0.1 919,999 + Rru_A0771 0.59 +0.1 919,999 + Rru_A0771 0.59 +0.1 920,000 - Rru_A0771 0.59 +0.1 920,000 - Rru_A0771 0.59 +0.1 920,000 - Rru_A0771 0.59 -0.8 920,041 + Rru_A0771 0.59 +0.1 920,042 - Rru_A0771 0.59 +0.1 920,042 - Rru_A0771 0.59 -1.4 920,249 - Rru_A0771 0.64 -1.7 920,293 + Rru_A0771 0.65 +0.1 920,371 + Rru_A0771 0.67 +0.1 920,371 + Rru_A0771 0.67 +0.1 920,372 - Rru_A0771 0.67 -1.4 920,372 - Rru_A0771 0.67 -1.4 920,372 - Rru_A0771 0.67 +0.1 920,372 - Rru_A0771 0.67 +0.1 920,565 + Rru_A0771 0.71 +0.1 920,565 + Rru_A0771 0.71 +0.1 920,566 - Rru_A0771 0.71 +0.1 920,566 - Rru_A0771 0.71 +0.1 920,729 + Rru_A0771 0.75 -1.5 920,729 + Rru_A0771 0.75 +0.1 920,730 - Rru_A0771 0.75 -1.4 920,792 + Rru_A0771 0.76 +0.1 920,793 - Rru_A0771 0.76 +0.1 920,893 - Rru_A0771 0.78 +0.1 921,017 + Rru_A0771 0.81 +0.1 921,018 - Rru_A0771 0.81 +0.1 921,038 + Rru_A0771 0.82 -2.5 921,038 + Rru_A0771 0.82 -1.3 921,038 + Rru_A0771 0.82 -2.0 921,038 + Rru_A0771 0.82 +0.1 921,039 - Rru_A0771 0.82 -1.4 921,067 + Rru_A0771 0.82 +0.1 921,142 - Rru_A0771 0.84 -2.9 921,156 - Rru_A0771 0.84 +0.1 921,156 - Rru_A0771 0.84 -1.3 921,236 + Rru_A0771 0.86 +0.1 921,359 - Rru_A0771 0.89 +0.1 921,363 - Rru_A0771 0.89 +0.1 921,366 - Rru_A0771 0.89 +0.1 921,436 + +0.1 921,448 + +0.1 921,448 + +0.1 921,448 + +0.1 921,448 + +0.1 921,449 - +0.1 921,449 - +0.1 921,598 + -1.3 921,599 - +0.1 921,599 - +0.1 921,599 - +0.1 921,769 + +0.1 921,770 - +0.1 921,863 - -0.9 921,880 - +0.1 921,976 + -1.4 922,141 + -2.1 922,163 + -1.5 922,164 - +0.1 922,164 - -1.8 922,164 - -0.9 922,373 + Rru_A0772 0.21 +0.1 922,374 - Rru_A0772 0.21 -1.5 922,562 + Rru_A0772 0.35 +0.1 922,571 + Rru_A0772 0.36 +0.1 922,571 + Rru_A0772 0.36 +0.1 922,572 - Rru_A0772 0.36 +0.1 922,572 - Rru_A0772 0.36 -2.0 922,574 + Rru_A0772 0.36 +0.1 922,574 + Rru_A0772 0.36 -0.9 922,574 + Rru_A0772 0.36 -1.4 922,575 - Rru_A0772 0.36 -1.2 922,770 + Rru_A0772 0.51 +0.1 922,834 - Rru_A0772 0.56 +0.1
Or see this region's nucleotide sequence