Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0735

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0733 and Rru_A0734 are separated by 114 nucleotidesRru_A0734 and Rru_A0735 are separated by 28 nucleotidesRru_A0735 and Rru_A0736 are separated by 23 nucleotides Rru_A0733: Rru_A0733 - Peptidase M24A, methionine aminopeptidase, subfamily 1 (NCBI), at 860,118 to 860,933 _A0733 Rru_A0734: Rru_A0734 - hypothetical protein (NCBI), at 861,048 to 861,503 _A0734 Rru_A0735: Rru_A0735 - Sugar fermentation stimulation protein (NCBI), at 861,532 to 862,269 _A0735 Rru_A0736: Rru_A0736 - hypothetical protein (NCBI), at 862,293 to 863,219 _A0736 Position (kb) 861 862 863Strain fitness (log2 ratio) -1 0 1at 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.975 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.977 kb on + strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 860.978 kb on - strandat 861.033 kb on + strandat 861.034 kb on - strandat 861.108 kb on + strand, within Rru_A0734at 861.204 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.371 kb on + strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.372 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.374 kb on - strand, within Rru_A0734at 861.425 kb on - strand, within Rru_A0734at 861.605 kb on + strandat 861.606 kb on - strand, within Rru_A0735at 861.606 kb on - strand, within Rru_A0735at 861.651 kb on - strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.710 kb on + strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.711 kb on - strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.857 kb on + strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 861.858 kb on - strand, within Rru_A0735at 862.044 kb on - strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.076 kb on + strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.077 kb on - strand, within Rru_A0735at 862.223 kb on + strandat 862.223 kb on + strandat 862.224 kb on - strandat 863.229 kb on + strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.230 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strandat 863.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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860,975 + +0.1
860,975 + +0.0
860,975 + +0.4
860,975 + +0.1
860,975 + +0.8
860,975 + +0.5
860,975 + +0.1
860,975 + +0.1
860,975 + +0.1
860,977 + +0.1
860,977 + +0.1
860,977 + +0.1
860,977 + +0.1
860,977 + +0.1
860,977 + -0.6
860,978 - +0.1
860,978 - +0.1
860,978 - +0.1
860,978 - -0.3
860,978 - +0.1
860,978 - +0.1
861,033 + +0.4
861,034 - -0.1
861,108 + Rru_A0734 0.13 +0.1
861,204 + Rru_A0734 0.34 +0.1
861,371 + Rru_A0734 0.71 +0.1
861,371 + Rru_A0734 0.71 -0.7
861,371 + Rru_A0734 0.71 +1.6
861,372 - Rru_A0734 0.71 -0.7
861,372 - Rru_A0734 0.71 -0.8
861,372 - Rru_A0734 0.71 -0.4
861,372 - Rru_A0734 0.71 +0.1
861,372 - Rru_A0734 0.71 -1.1
861,372 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 +0.1
861,374 - Rru_A0734 0.71 -0.5
861,425 - Rru_A0734 0.83 +0.1
861,605 + +0.1
861,606 - Rru_A0735 0.10 +0.4
861,606 - Rru_A0735 0.10 +0.1
861,651 - Rru_A0735 0.16 -0.5
861,710 + Rru_A0735 0.24 +0.1
861,710 + Rru_A0735 0.24 +0.1
861,710 + Rru_A0735 0.24 -0.0
861,710 + Rru_A0735 0.24 -1.3
861,711 - Rru_A0735 0.24 +0.1
861,711 - Rru_A0735 0.24 +0.1
861,857 + Rru_A0735 0.44 +0.1
861,857 + Rru_A0735 0.44 +0.1
861,857 + Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 +0.1
861,858 - Rru_A0735 0.44 -0.5
862,044 - Rru_A0735 0.69 +0.0
862,076 + Rru_A0735 0.74 +0.1
862,076 + Rru_A0735 0.74 +0.1
862,076 + Rru_A0735 0.74 +0.1
862,076 + Rru_A0735 0.74 -0.9
862,076 + Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 -0.4
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,077 - Rru_A0735 0.74 +0.1
862,223 + +0.1
862,223 + +0.1
862,224 - +0.1
863,229 + -0.2
863,230 - -0.4
863,230 - +0.1
863,230 - +0.1
863,232 - -0.5
863,232 - +0.1
863,232 - +0.1
863,232 - +0.1

Or see this region's nucleotide sequence