Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0550

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0549 and Rru_A0550 are separated by 142 nucleotidesRru_A0550 and Rru_A0551 are separated by 126 nucleotides Rru_A0549: Rru_A0549 - hypothetical protein (NCBI), at 648,132 to 649,259 _A0549 Rru_A0550: Rru_A0550 - TPR repeat (NCBI), at 649,402 to 651,189 _A0550 Rru_A0551: Rru_A0551 - TPR domain protein (NCBI), at 651,316 to 652,941 _A0551 Position (kb) 649 650 651 652Strain fitness (log2 ratio) -2 -1 0 1at 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.686 kb on + strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.687 kb on - strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.688 kb on + strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.689 kb on - strand, within Rru_A0549at 648.697 kb on + strand, within Rru_A0549at 648.698 kb on - strand, within Rru_A0549at 648.778 kb on + strand, within Rru_A0549at 648.778 kb on + strand, within Rru_A0549at 648.823 kb on + strand, within Rru_A0549at 648.824 kb on - strand, within Rru_A0549at 648.878 kb on + strand, within Rru_A0549at 648.878 kb on + strand, within Rru_A0549at 648.878 kb on + strand, within Rru_A0549at 648.878 kb on + strand, within Rru_A0549at 648.878 kb on + strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.879 kb on - strand, within Rru_A0549at 648.880 kb on + strand, within Rru_A0549at 648.880 kb on + strand, within Rru_A0549at 648.880 kb on + strand, within Rru_A0549at 648.880 kb on + strand, within Rru_A0549at 648.960 kb on - strand, within Rru_A0549at 648.960 kb on - strand, within Rru_A0549at 648.960 kb on - strand, within Rru_A0549at 648.961 kb on + strand, within Rru_A0549at 648.961 kb on + strand, within Rru_A0549at 648.961 kb on + strand, within Rru_A0549at 648.962 kb on - strand, within Rru_A0549at 649.043 kb on + strand, within Rru_A0549at 649.043 kb on + strand, within Rru_A0549at 649.043 kb on + strand, within Rru_A0549at 649.044 kb on - strand, within Rru_A0549at 649.213 kb on + strandat 649.213 kb on + strandat 649.213 kb on + strandat 649.214 kb on - strandat 649.214 kb on - strandat 649.227 kb on + strandat 649.227 kb on + strandat 649.228 kb on - strandat 649.228 kb on - strandat 649.315 kb on - strandat 649.372 kb on - strandat 649.373 kb on + strandat 649.374 kb on - strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.544 kb on + strandat 649.545 kb on - strandat 649.545 kb on - strandat 649.545 kb on - strandat 649.545 kb on - strandat 649.545 kb on - strandat 649.720 kb on + strand, within Rru_A0550at 649.720 kb on + strand, within Rru_A0550at 649.721 kb on - strand, within Rru_A0550at 649.721 kb on - strand, within Rru_A0550at 649.933 kb on + strand, within Rru_A0550at 650.342 kb on + strand, within Rru_A0550at 650.375 kb on - strand, within Rru_A0550at 650.450 kb on + strand, within Rru_A0550at 650.544 kb on + strand, within Rru_A0550at 650.545 kb on - strand, within Rru_A0550at 650.545 kb on - strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.546 kb on + strand, within Rru_A0550at 650.547 kb on - strand, within Rru_A0550at 651.749 kb on - strand, within Rru_A0551at 651.749 kb on - strand, within Rru_A0551at 651.749 kb on - strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.793 kb on + strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.794 kb on - strand, within Rru_A0551at 651.795 kb on + strand, within Rru_A0551at 651.796 kb on - strand, within Rru_A0551at 651.796 kb on - strand, within Rru_A0551at 652.055 kb on - strand, within Rru_A0551

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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648,686 + Rru_A0549 0.49 +0.0
648,686 + Rru_A0549 0.49 -0.9
648,686 + Rru_A0549 0.49 -1.6
648,686 + Rru_A0549 0.49 +0.0
648,687 - Rru_A0549 0.49 -1.2
648,687 - Rru_A0549 0.49 +0.0
648,687 - Rru_A0549 0.49 +0.0
648,687 - Rru_A0549 0.49 +0.0
648,688 + Rru_A0549 0.49 -1.0
648,688 + Rru_A0549 0.49 -1.0
648,688 + Rru_A0549 0.49 +0.0
648,689 - Rru_A0549 0.49 -1.1
648,689 - Rru_A0549 0.49 -0.2
648,689 - Rru_A0549 0.49 +0.0
648,689 - Rru_A0549 0.49 -1.0
648,697 + Rru_A0549 0.50 +0.0
648,698 - Rru_A0549 0.50 +0.0
648,778 + Rru_A0549 0.57 +0.0
648,778 + Rru_A0549 0.57 -1.0
648,823 + Rru_A0549 0.61 -0.8
648,824 - Rru_A0549 0.61 +0.0
648,878 + Rru_A0549 0.66 +0.0
648,878 + Rru_A0549 0.66 +0.0
648,878 + Rru_A0549 0.66 -0.9
648,878 + Rru_A0549 0.66 +0.0
648,878 + Rru_A0549 0.66 +0.0
648,879 - Rru_A0549 0.66 -1.3
648,879 - Rru_A0549 0.66 +0.0
648,879 - Rru_A0549 0.66 -1.2
648,879 - Rru_A0549 0.66 +0.0
648,879 - Rru_A0549 0.66 -0.6
648,879 - Rru_A0549 0.66 -0.9
648,880 + Rru_A0549 0.66 -0.6
648,880 + Rru_A0549 0.66 +0.0
648,880 + Rru_A0549 0.66 -0.7
648,880 + Rru_A0549 0.66 +0.0
648,960 - Rru_A0549 0.73 -1.0
648,960 - Rru_A0549 0.73 -1.3
648,960 - Rru_A0549 0.73 -1.3
648,961 + Rru_A0549 0.73 +0.0
648,961 + Rru_A0549 0.73 +0.0
648,961 + Rru_A0549 0.73 +0.0
648,962 - Rru_A0549 0.74 +0.0
649,043 + Rru_A0549 0.81 -1.1
649,043 + Rru_A0549 0.81 +0.0
649,043 + Rru_A0549 0.81 +0.0
649,044 - Rru_A0549 0.81 +0.0
649,213 + +0.0
649,213 + -1.7
649,213 + -0.4
649,214 - -0.9
649,214 - +0.0
649,227 + -1.0
649,227 + +0.0
649,228 - +0.0
649,228 - +0.0
649,315 - +0.0
649,372 - -0.4
649,373 + +0.0
649,374 - +0.0
649,544 + +0.0
649,544 + -1.5
649,544 + +0.0
649,544 + +0.0
649,544 + -1.0
649,544 + +0.0
649,544 + +0.0
649,545 - +0.0
649,545 - +0.0
649,545 - -1.8
649,545 - +0.0
649,545 - +0.0
649,720 + Rru_A0550 0.18 -1.2
649,720 + Rru_A0550 0.18 -1.0
649,721 - Rru_A0550 0.18 -0.9
649,721 - Rru_A0550 0.18 +0.0
649,933 + Rru_A0550 0.30 -1.0
650,342 + Rru_A0550 0.53 -0.1
650,375 - Rru_A0550 0.54 +0.0
650,450 + Rru_A0550 0.59 +0.0
650,544 + Rru_A0550 0.64 +0.0
650,545 - Rru_A0550 0.64 -0.9
650,545 - Rru_A0550 0.64 -1.0
650,546 + Rru_A0550 0.64 -1.0
650,546 + Rru_A0550 0.64 +0.0
650,546 + Rru_A0550 0.64 -0.8
650,546 + Rru_A0550 0.64 +0.0
650,546 + Rru_A0550 0.64 -1.4
650,547 - Rru_A0550 0.64 +0.0
651,749 - Rru_A0551 0.27 -1.6
651,749 - Rru_A0551 0.27 +0.0
651,749 - Rru_A0551 0.27 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,793 + Rru_A0551 0.29 +0.0
651,794 - Rru_A0551 0.29 -1.5
651,794 - Rru_A0551 0.29 +0.0
651,794 - Rru_A0551 0.29 +0.0
651,795 + Rru_A0551 0.29 +0.0
651,796 - Rru_A0551 0.30 -1.9
651,796 - Rru_A0551 0.30 -1.4
652,055 - Rru_A0551 0.45 +0.0

Or see this region's nucleotide sequence