Strain Fitness in Rhodospirillum rubrum S1H around Rru_A0293

Experiment: L-Malic Acid (C) with ammonium chloride; no light

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A0291 and Rru_A0292 are separated by 145 nucleotidesRru_A0292 and Rru_A0293 are separated by 201 nucleotidesRru_A0293 and Rru_A0294 are separated by 374 nucleotides Rru_A0291: Rru_A0291 - hypothetical protein (NCBI), at 357,093 to 357,428 _A0291 Rru_A0292: Rru_A0292 - Integration host factor, beta subunit (NCBI), at 357,574 to 357,876 _A0292 Rru_A0293: Rru_A0293 - Ribosomal protein S1 (NCBI), at 358,078 to 359,799 _A0293 Rru_A0294: Rru_A0294 - Cytidylate kinase (NCBI), at 360,174 to 360,815 _A0294 Position (kb) 358 359 360Strain fitness (log2 ratio) -1 0 1at 357.149 kb on - strand, within Rru_A0291at 357.223 kb on + strand, within Rru_A0291at 357.223 kb on + strand, within Rru_A0291at 357.967 kb on + strandat 359.881 kb on - strandat 360.125 kb on - strandat 360.125 kb on - strandat 360.125 kb on - strandat 360.719 kb on + strand, within Rru_A0294

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light
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357,149 - Rru_A0291 0.17 -1.5
357,223 + Rru_A0291 0.39 +0.1
357,223 + Rru_A0291 0.39 -1.6
357,967 + +0.1
359,881 - +0.1
360,125 - -1.3
360,125 - +0.1
360,125 - +0.1
360,719 + Rru_A0294 0.85 +0.1

Or see this region's nucleotide sequence