Experiment: L-Malic Acid (C) with ammonium chloride; no light
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A0138 and Rru_A0139 are separated by 278 nucleotides Rru_A0139 and Rru_A0140 are separated by 72 nucleotides Rru_A0140 and Rru_A0141 are separated by 32 nucleotides
Rru_A0138: Rru_A0138 - Leucyl aminopeptidase (NCBI), at 161,613 to 163,004
_A0138
Rru_A0139: Rru_A0139 - Transcriptional Regulator, MarR family (NCBI), at 163,283 to 163,636
_A0139
Rru_A0140: Rru_A0140 - Transcriptional Regulator, AraC family (NCBI), at 163,709 to 164,479
_A0140
Rru_A0141: Rru_A0141 - Porphobilinogen synthase (NCBI), at 164,512 to 165,495
_A0141
Position (kb) 163
164
165 Strain fitness (log2 ratio) -2
-1
0
1 at 163.061 kb on + strand at 163.138 kb on + strand at 163.156 kb on + strand at 163.157 kb on - strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.163 kb on + strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.164 kb on - strand at 163.166 kb on + strand at 163.195 kb on + strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.196 kb on - strand at 163.268 kb on + strand at 163.320 kb on + strand, within Rru_A0139 at 163.321 kb on - strand, within Rru_A0139 at 163.403 kb on + strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.404 kb on - strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.516 kb on + strand, within Rru_A0139 at 163.517 kb on - strand, within Rru_A0139 at 163.676 kb on - strand at 163.676 kb on - strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.684 kb on + strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.685 kb on - strand at 163.687 kb on - strand at 163.717 kb on + strand at 163.718 kb on - strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.730 kb on + strand at 163.731 kb on - strand at 163.731 kb on - strand at 163.776 kb on - strand at 163.776 kb on - strand at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.827 kb on + strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.828 kb on - strand, within Rru_A0140 at 163.829 kb on + strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.830 kb on - strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.868 kb on + strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.869 kb on - strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.964 kb on + strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.965 kb on - strand, within Rru_A0140 at 163.967 kb on - strand, within Rru_A0140 at 164.075 kb on + strand, within Rru_A0140 at 164.076 kb on - strand, within Rru_A0140 at 164.115 kb on + strand, within Rru_A0140 at 164.116 kb on - strand, within Rru_A0140 at 164.116 kb on - strand, within Rru_A0140 at 164.116 kb on - strand, within Rru_A0140 at 164.118 kb on + strand, within Rru_A0140 at 164.118 kb on + strand, within Rru_A0140 at 164.118 kb on + strand, within Rru_A0140 at 164.119 kb on - strand, within Rru_A0140 at 164.119 kb on - strand, within Rru_A0140 at 164.188 kb on + strand, within Rru_A0140 at 164.189 kb on - strand, within Rru_A0140 at 164.305 kb on - strand, within Rru_A0140 at 164.305 kb on - strand, within Rru_A0140 at 164.402 kb on + strand, within Rru_A0140 at 164.403 kb on - strand at 164.403 kb on - strand at 164.465 kb on + strand at 164.465 kb on + strand at 164.465 kb on + strand at 164.465 kb on + strand at 164.465 kb on + strand at 164.465 kb on + strand at 164.466 kb on - strand at 164.466 kb on - strand at 164.555 kb on + strand at 164.663 kb on + strand, within Rru_A0141 at 164.663 kb on + strand, within Rru_A0141 at 164.664 kb on - strand, within Rru_A0141 at 164.682 kb on - strand, within Rru_A0141 at 164.682 kb on - strand, within Rru_A0141 at 164.736 kb on - strand, within Rru_A0141 at 164.736 kb on - strand, within Rru_A0141 at 164.834 kb on + strand, within Rru_A0141 at 164.834 kb on + strand, within Rru_A0141 at 164.834 kb on + strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.835 kb on - strand, within Rru_A0141 at 164.872 kb on + strand, within Rru_A0141 at 164.916 kb on - strand, within Rru_A0141 at 164.922 kb on + strand, within Rru_A0141 at 165.182 kb on - strand, within Rru_A0141
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic Acid (C) with ammonium chloride; no light remove 163,061 + +0.0 163,138 + -1.0 163,156 + -1.0 163,157 - -1.1 163,163 + +0.0 163,163 + +0.0 163,163 + -1.0 163,164 - +0.0 163,164 - +0.0 163,164 - +0.0 163,166 + +0.0 163,195 + -1.0 163,196 - +0.0 163,196 - +0.0 163,196 - +0.0 163,268 + +0.0 163,320 + Rru_A0139 0.10 +0.7 163,321 - Rru_A0139 0.11 +0.0 163,403 + Rru_A0139 0.34 -2.2 163,404 - Rru_A0139 0.34 -1.0 163,404 - Rru_A0139 0.34 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,516 + Rru_A0139 0.66 +0.0 163,517 - Rru_A0139 0.66 +0.0 163,676 - +0.0 163,676 - +0.0 163,684 + +0.0 163,684 + -0.6 163,684 + +0.0 163,684 + +0.0 163,684 + +0.0 163,685 - -2.0 163,685 - +0.0 163,685 - -2.0 163,685 - +0.0 163,685 - +0.0 163,685 - -2.3 163,685 - +0.0 163,685 - +0.0 163,687 - -0.9 163,717 + +0.0 163,718 - -0.8 163,730 + +0.0 163,730 + +0.0 163,730 + +0.0 163,731 - -1.7 163,731 - +0.0 163,776 - -1.0 163,776 - -1.8 163,827 + Rru_A0140 0.15 -1.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 -1.1 163,827 + Rru_A0140 0.15 +0.0 163,827 + Rru_A0140 0.15 +0.7 163,828 - Rru_A0140 0.15 -2.3 163,828 - Rru_A0140 0.15 -1.4 163,828 - Rru_A0140 0.15 +0.0 163,828 - Rru_A0140 0.15 -1.2 163,828 - Rru_A0140 0.15 -1.0 163,829 + Rru_A0140 0.16 -1.1 163,830 - Rru_A0140 0.16 +0.0 163,830 - Rru_A0140 0.16 +0.0 163,830 - Rru_A0140 0.16 -1.0 163,830 - Rru_A0140 0.16 -1.7 163,830 - Rru_A0140 0.16 -0.5 163,868 + Rru_A0140 0.21 -1.5 163,868 + Rru_A0140 0.21 +0.0 163,868 + Rru_A0140 0.21 +0.0 163,869 - Rru_A0140 0.21 +0.0 163,869 - Rru_A0140 0.21 -1.2 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 -1.0 163,964 + Rru_A0140 0.33 +0.0 163,964 + Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 +0.0 163,965 - Rru_A0140 0.33 -1.0 163,965 - Rru_A0140 0.33 -1.0 163,965 - Rru_A0140 0.33 +0.0 163,967 - Rru_A0140 0.33 -2.1 164,075 + Rru_A0140 0.47 -1.3 164,076 - Rru_A0140 0.48 +0.0 164,115 + Rru_A0140 0.53 +0.0 164,116 - Rru_A0140 0.53 +0.0 164,116 - Rru_A0140 0.53 +0.0 164,116 - Rru_A0140 0.53 +0.0 164,118 + Rru_A0140 0.53 -1.5 164,118 + Rru_A0140 0.53 -1.3 164,118 + Rru_A0140 0.53 +0.0 164,119 - Rru_A0140 0.53 +0.0 164,119 - Rru_A0140 0.53 +0.0 164,188 + Rru_A0140 0.62 +0.0 164,189 - Rru_A0140 0.62 -1.2 164,305 - Rru_A0140 0.77 +0.0 164,305 - Rru_A0140 0.77 +0.0 164,402 + Rru_A0140 0.90 -1.6 164,403 - +0.0 164,403 - -1.2 164,465 + +0.0 164,465 + +0.0 164,465 + +0.0 164,465 + +0.0 164,465 + +0.0 164,465 + +0.0 164,466 - +0.8 164,466 - -0.9 164,555 + +0.0 164,663 + Rru_A0141 0.15 +0.0 164,663 + Rru_A0141 0.15 +0.0 164,664 - Rru_A0141 0.15 +0.0 164,682 - Rru_A0141 0.17 -0.9 164,682 - Rru_A0141 0.17 -0.8 164,736 - Rru_A0141 0.23 +0.0 164,736 - Rru_A0141 0.23 +0.0 164,834 + Rru_A0141 0.33 +0.0 164,834 + Rru_A0141 0.33 +0.0 164,834 + Rru_A0141 0.33 +0.0 164,835 - Rru_A0141 0.33 +0.0 164,835 - Rru_A0141 0.33 -1.8 164,835 - Rru_A0141 0.33 -1.1 164,872 + Rru_A0141 0.37 -1.2 164,916 - Rru_A0141 0.41 +0.0 164,922 + Rru_A0141 0.42 +0.0 165,182 - Rru_A0141 0.68 -1.4
Or see this region's nucleotide sequence