Experiment: KB with Rotenone 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4974 and Psyr_4975 are separated by 140 nucleotides Psyr_4975 and Psyr_4976 are separated by 64 nucleotides Psyr_4976 and Psyr_4977 are separated by 575 nucleotides
Psyr_4974: Psyr_4974 - Rhs element Vgr protein, at 5,898,317 to 5,901,193
_4974
Psyr_4975: Psyr_4975 - hypothetical protein, at 5,901,334 to 5,902,053
_4975
Psyr_4976: Psyr_4976 - conserved hypothetical protein, at 5,902,118 to 5,902,672
_4976
Psyr_4977: Psyr_4977 - ADP-ribosylglycohydrolase, at 5,903,248 to 5,904,258
_4977
Position (kb) 5902
5903 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5901.158 kb on + strand at 5901.158 kb on + strand at 5901.159 kb on - strand at 5901.159 kb on - strand at 5901.254 kb on + strand at 5901.255 kb on - strand at 5901.255 kb on - strand at 5901.320 kb on + strand at 5901.320 kb on + strand at 5901.320 kb on + strand at 5901.321 kb on - strand at 5901.321 kb on - strand at 5901.332 kb on + strand at 5901.332 kb on + strand at 5901.340 kb on - strand at 5901.348 kb on + strand at 5901.397 kb on - strand at 5901.433 kb on + strand, within Psyr_4975 at 5901.437 kb on + strand, within Psyr_4975 at 5901.437 kb on + strand, within Psyr_4975 at 5901.438 kb on - strand, within Psyr_4975 at 5901.438 kb on - strand, within Psyr_4975 at 5901.476 kb on + strand, within Psyr_4975 at 5901.476 kb on + strand, within Psyr_4975 at 5901.476 kb on + strand, within Psyr_4975 at 5901.477 kb on - strand, within Psyr_4975 at 5901.478 kb on + strand, within Psyr_4975 at 5901.478 kb on + strand, within Psyr_4975 at 5901.478 kb on + strand, within Psyr_4975 at 5901.478 kb on + strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.479 kb on - strand, within Psyr_4975 at 5901.483 kb on - strand, within Psyr_4975 at 5901.487 kb on + strand, within Psyr_4975 at 5901.488 kb on - strand, within Psyr_4975 at 5901.502 kb on + strand, within Psyr_4975 at 5901.503 kb on - strand, within Psyr_4975 at 5901.511 kb on + strand, within Psyr_4975 at 5901.511 kb on + strand, within Psyr_4975 at 5901.511 kb on + strand, within Psyr_4975 at 5901.511 kb on + strand, within Psyr_4975 at 5901.511 kb on + strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.512 kb on - strand, within Psyr_4975 at 5901.514 kb on - strand, within Psyr_4975 at 5901.525 kb on + strand, within Psyr_4975 at 5901.564 kb on + strand, within Psyr_4975 at 5901.569 kb on + strand, within Psyr_4975 at 5901.569 kb on + strand, within Psyr_4975 at 5901.569 kb on + strand, within Psyr_4975 at 5901.569 kb on + strand, within Psyr_4975 at 5901.570 kb on - strand, within Psyr_4975 at 5901.574 kb on + strand, within Psyr_4975 at 5901.575 kb on - strand, within Psyr_4975 at 5901.575 kb on - strand, within Psyr_4975 at 5901.624 kb on + strand, within Psyr_4975 at 5901.648 kb on + strand, within Psyr_4975 at 5901.649 kb on - strand, within Psyr_4975 at 5901.649 kb on - strand, within Psyr_4975 at 5901.650 kb on + strand, within Psyr_4975 at 5901.662 kb on - strand, within Psyr_4975 at 5901.662 kb on - strand, within Psyr_4975 at 5901.738 kb on + strand, within Psyr_4975 at 5901.763 kb on + strand, within Psyr_4975 at 5901.763 kb on + strand, within Psyr_4975 at 5901.764 kb on - strand, within Psyr_4975 at 5901.766 kb on - strand, within Psyr_4975 at 5901.845 kb on + strand, within Psyr_4975 at 5901.846 kb on - strand, within Psyr_4975 at 5901.846 kb on - strand, within Psyr_4975 at 5901.846 kb on - strand, within Psyr_4975 at 5901.864 kb on + strand, within Psyr_4975 at 5901.884 kb on + strand, within Psyr_4975 at 5901.885 kb on - strand, within Psyr_4975 at 5901.885 kb on - strand, within Psyr_4975 at 5901.892 kb on + strand, within Psyr_4975 at 5901.892 kb on + strand, within Psyr_4975 at 5901.892 kb on + strand, within Psyr_4975 at 5901.892 kb on + strand, within Psyr_4975 at 5901.893 kb on - strand, within Psyr_4975 at 5901.893 kb on - strand, within Psyr_4975 at 5901.893 kb on - strand, within Psyr_4975 at 5901.945 kb on + strand, within Psyr_4975 at 5901.945 kb on + strand, within Psyr_4975 at 5901.945 kb on + strand, within Psyr_4975 at 5901.945 kb on + strand, within Psyr_4975 at 5902.051 kb on + strand at 5902.051 kb on + strand at 5902.077 kb on + strand at 5902.077 kb on + strand at 5902.077 kb on + strand at 5902.077 kb on + strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.078 kb on - strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.087 kb on + strand at 5902.088 kb on - strand at 5902.088 kb on - strand at 5902.088 kb on - strand at 5902.091 kb on + strand at 5902.140 kb on + strand at 5902.140 kb on + strand at 5902.140 kb on + strand at 5902.140 kb on + strand at 5902.140 kb on + strand at 5902.140 kb on + strand at 5902.141 kb on - strand at 5902.141 kb on - strand at 5902.141 kb on - strand at 5902.141 kb on - strand at 5902.141 kb on - strand at 5902.141 kb on - strand at 5902.185 kb on - strand, within Psyr_4976 at 5902.185 kb on - strand, within Psyr_4976 at 5902.188 kb on + strand, within Psyr_4976 at 5902.189 kb on - strand, within Psyr_4976 at 5902.239 kb on + strand, within Psyr_4976 at 5902.239 kb on + strand, within Psyr_4976 at 5902.239 kb on + strand, within Psyr_4976 at 5902.239 kb on + strand, within Psyr_4976 at 5902.240 kb on - strand, within Psyr_4976 at 5902.240 kb on - strand, within Psyr_4976 at 5902.240 kb on - strand, within Psyr_4976 at 5902.240 kb on - strand, within Psyr_4976 at 5902.353 kb on + strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.354 kb on - strand, within Psyr_4976 at 5902.562 kb on + strand, within Psyr_4976 at 5902.563 kb on - strand, within Psyr_4976 at 5902.575 kb on + strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.576 kb on - strand, within Psyr_4976 at 5902.644 kb on + strand at 5902.644 kb on + strand at 5902.644 kb on + strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.645 kb on - strand at 5902.698 kb on - strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.699 kb on + strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.700 kb on - strand at 5902.750 kb on + strand at 5902.751 kb on - strand at 5902.752 kb on + strand at 5902.752 kb on + strand at 5902.752 kb on + strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.753 kb on - strand at 5902.763 kb on + strand at 5902.763 kb on + strand at 5902.764 kb on - strand at 5902.764 kb on - strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.775 kb on + strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.776 kb on - strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.777 kb on + strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.778 kb on - strand at 5902.826 kb on + strand at 5902.826 kb on + strand at 5902.868 kb on + strand at 5902.868 kb on + strand at 5902.868 kb on + strand at 5902.882 kb on + strand at 5902.882 kb on + strand at 5902.986 kb on + strand at 5903.023 kb on + strand at 5903.024 kb on - strand at 5903.062 kb on + strand at 5903.063 kb on - strand at 5903.063 kb on - strand at 5903.063 kb on - strand at 5903.103 kb on + strand at 5903.104 kb on - strand at 5903.104 kb on - strand at 5903.107 kb on + strand at 5903.107 kb on + strand at 5903.108 kb on - strand at 5903.142 kb on - strand at 5903.183 kb on + strand at 5903.261 kb on + strand at 5903.262 kb on - strand at 5903.266 kb on - strand at 5903.456 kb on - strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.460 kb on + strand, within Psyr_4977 at 5903.461 kb on - strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.525 kb on + strand, within Psyr_4977 at 5903.526 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977 at 5903.654 kb on - strand, within Psyr_4977
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Rotenone 0.25 mg/ml remove 5,901,158 + +0.4 5,901,158 + -0.3 5,901,159 - -1.1 5,901,159 - +0.1 5,901,254 + -0.3 5,901,255 - +0.8 5,901,255 - +0.6 5,901,320 + -0.7 5,901,320 + +1.4 5,901,320 + +0.3 5,901,321 - -0.2 5,901,321 - -0.7 5,901,332 + -0.3 5,901,332 + -0.3 5,901,340 - -0.1 5,901,348 + +0.6 5,901,397 - -1.8 5,901,433 + Psyr_4975 0.14 -0.7 5,901,437 + Psyr_4975 0.14 -0.1 5,901,437 + Psyr_4975 0.14 +0.4 5,901,438 - Psyr_4975 0.14 +0.6 5,901,438 - Psyr_4975 0.14 +0.5 5,901,476 + Psyr_4975 0.20 -0.6 5,901,476 + Psyr_4975 0.20 +0.3 5,901,476 + Psyr_4975 0.20 +0.1 5,901,477 - Psyr_4975 0.20 +0.4 5,901,478 + Psyr_4975 0.20 -0.5 5,901,478 + Psyr_4975 0.20 +0.2 5,901,478 + Psyr_4975 0.20 -0.4 5,901,478 + Psyr_4975 0.20 +0.6 5,901,479 - Psyr_4975 0.20 -0.2 5,901,479 - Psyr_4975 0.20 -0.7 5,901,479 - Psyr_4975 0.20 +0.3 5,901,479 - Psyr_4975 0.20 +0.5 5,901,479 - Psyr_4975 0.20 +1.1 5,901,479 - Psyr_4975 0.20 -0.2 5,901,479 - Psyr_4975 0.20 +0.3 5,901,479 - Psyr_4975 0.20 -0.2 5,901,483 - Psyr_4975 0.21 +0.9 5,901,487 + Psyr_4975 0.21 +0.3 5,901,488 - Psyr_4975 0.21 +0.8 5,901,502 + Psyr_4975 0.23 -0.0 5,901,503 - Psyr_4975 0.23 -0.7 5,901,511 + Psyr_4975 0.25 +1.6 5,901,511 + Psyr_4975 0.25 -1.4 5,901,511 + Psyr_4975 0.25 +0.3 5,901,511 + Psyr_4975 0.25 +0.7 5,901,511 + Psyr_4975 0.25 +0.0 5,901,512 - Psyr_4975 0.25 +0.2 5,901,512 - Psyr_4975 0.25 +0.4 5,901,512 - Psyr_4975 0.25 +0.2 5,901,512 - Psyr_4975 0.25 -0.6 5,901,512 - Psyr_4975 0.25 -0.1 5,901,512 - Psyr_4975 0.25 -0.7 5,901,512 - Psyr_4975 0.25 -0.6 5,901,512 - Psyr_4975 0.25 -0.9 5,901,514 - Psyr_4975 0.25 -0.0 5,901,525 + Psyr_4975 0.27 -0.5 5,901,564 + Psyr_4975 0.32 +0.8 5,901,569 + Psyr_4975 0.33 +0.3 5,901,569 + Psyr_4975 0.33 +0.8 5,901,569 + Psyr_4975 0.33 -1.2 5,901,569 + Psyr_4975 0.33 -1.0 5,901,570 - Psyr_4975 0.33 +0.4 5,901,574 + Psyr_4975 0.33 -1.0 5,901,575 - Psyr_4975 0.33 -0.4 5,901,575 - Psyr_4975 0.33 +0.6 5,901,624 + Psyr_4975 0.40 -0.3 5,901,648 + Psyr_4975 0.44 +1.4 5,901,649 - Psyr_4975 0.44 +0.1 5,901,649 - Psyr_4975 0.44 +1.7 5,901,650 + Psyr_4975 0.44 -0.4 5,901,662 - Psyr_4975 0.46 +0.3 5,901,662 - Psyr_4975 0.46 -0.7 5,901,738 + Psyr_4975 0.56 -0.2 5,901,763 + Psyr_4975 0.60 +0.2 5,901,763 + Psyr_4975 0.60 +1.7 5,901,764 - Psyr_4975 0.60 -0.9 5,901,766 - Psyr_4975 0.60 -3.4 5,901,845 + Psyr_4975 0.71 +0.4 5,901,846 - Psyr_4975 0.71 +1.2 5,901,846 - Psyr_4975 0.71 -0.2 5,901,846 - Psyr_4975 0.71 -0.6 5,901,864 + Psyr_4975 0.74 +0.4 5,901,884 + Psyr_4975 0.76 -0.2 5,901,885 - Psyr_4975 0.77 +0.1 5,901,885 - Psyr_4975 0.77 -0.7 5,901,892 + Psyr_4975 0.78 -0.3 5,901,892 + Psyr_4975 0.78 +0.5 5,901,892 + Psyr_4975 0.78 -0.4 5,901,892 + Psyr_4975 0.78 +0.4 5,901,893 - Psyr_4975 0.78 +0.8 5,901,893 - Psyr_4975 0.78 +0.6 5,901,893 - Psyr_4975 0.78 +1.3 5,901,945 + Psyr_4975 0.85 +0.0 5,901,945 + Psyr_4975 0.85 -1.0 5,901,945 + Psyr_4975 0.85 +0.1 5,901,945 + Psyr_4975 0.85 +0.6 5,902,051 + +0.6 5,902,051 + -0.2 5,902,077 + -0.7 5,902,077 + +0.1 5,902,077 + +0.8 5,902,077 + -0.7 5,902,078 - +1.2 5,902,078 - +0.1 5,902,078 - +0.3 5,902,078 - -0.9 5,902,078 - +0.7 5,902,078 - +0.5 5,902,078 - +0.5 5,902,078 - -1.6 5,902,078 - -0.2 5,902,078 - +1.3 5,902,078 - -1.2 5,902,078 - -0.0 5,902,078 - +0.5 5,902,078 - +0.1 5,902,087 + -1.2 5,902,087 + +0.1 5,902,087 + +1.8 5,902,087 + -1.5 5,902,087 + -1.6 5,902,087 + -0.6 5,902,087 + -0.1 5,902,088 - -0.1 5,902,088 - -0.5 5,902,088 - +0.5 5,902,091 + +0.9 5,902,140 + +1.4 5,902,140 + +0.0 5,902,140 + -1.6 5,902,140 + +1.1 5,902,140 + +0.3 5,902,140 + +1.2 5,902,141 - -0.1 5,902,141 - +0.0 5,902,141 - +0.6 5,902,141 - -0.7 5,902,141 - -0.4 5,902,141 - -0.4 5,902,185 - Psyr_4976 0.12 -0.5 5,902,185 - Psyr_4976 0.12 -1.2 5,902,188 + Psyr_4976 0.13 -2.0 5,902,189 - Psyr_4976 0.13 -1.5 5,902,239 + Psyr_4976 0.22 +0.3 5,902,239 + Psyr_4976 0.22 -3.0 5,902,239 + Psyr_4976 0.22 -0.1 5,902,239 + Psyr_4976 0.22 +1.2 5,902,240 - Psyr_4976 0.22 +0.5 5,902,240 - Psyr_4976 0.22 -1.1 5,902,240 - Psyr_4976 0.22 -0.5 5,902,240 - Psyr_4976 0.22 -1.7 5,902,353 + Psyr_4976 0.42 -1.1 5,902,354 - Psyr_4976 0.43 -2.0 5,902,354 - Psyr_4976 0.43 -2.0 5,902,354 - Psyr_4976 0.43 +0.3 5,902,562 + Psyr_4976 0.80 +0.1 5,902,563 - Psyr_4976 0.80 -3.3 5,902,575 + Psyr_4976 0.82 -0.4 5,902,576 - Psyr_4976 0.83 -1.1 5,902,576 - Psyr_4976 0.83 +1.7 5,902,576 - Psyr_4976 0.83 +0.4 5,902,576 - Psyr_4976 0.83 -0.7 5,902,576 - Psyr_4976 0.83 -0.6 5,902,576 - Psyr_4976 0.83 -0.0 5,902,576 - Psyr_4976 0.83 +0.3 5,902,644 + -0.3 5,902,644 + +0.1 5,902,644 + -0.0 5,902,645 - +0.6 5,902,645 - -0.1 5,902,645 - -0.4 5,902,645 - +0.6 5,902,698 - +1.3 5,902,699 + +0.5 5,902,699 + +1.1 5,902,699 + +0.6 5,902,699 + -0.3 5,902,699 + -1.2 5,902,699 + -0.7 5,902,699 + -1.4 5,902,699 + +0.9 5,902,699 + +0.1 5,902,700 - -0.2 5,902,700 - +0.2 5,902,700 - -0.6 5,902,700 - +0.1 5,902,700 - +0.1 5,902,700 - -0.3 5,902,700 - +0.8 5,902,750 + -0.3 5,902,751 - -0.5 5,902,752 + -0.2 5,902,752 + +1.6 5,902,752 + -0.9 5,902,753 - +0.4 5,902,753 - +0.3 5,902,753 - -0.2 5,902,753 - -1.2 5,902,763 + -1.1 5,902,763 + +1.3 5,902,764 - +0.3 5,902,764 - +0.9 5,902,775 + -2.7 5,902,775 + -0.7 5,902,775 + +0.5 5,902,775 + -0.7 5,902,775 + -1.5 5,902,776 - -0.4 5,902,776 - +0.0 5,902,776 - -0.3 5,902,776 - +0.7 5,902,776 - -0.2 5,902,776 - -0.6 5,902,776 - -0.8 5,902,776 - +1.4 5,902,777 + -0.7 5,902,777 + +0.3 5,902,777 + -0.8 5,902,777 + +0.3 5,902,777 + +0.8 5,902,777 + -0.2 5,902,777 + +1.2 5,902,777 + -0.7 5,902,777 + -0.2 5,902,777 + -0.1 5,902,778 - -0.5 5,902,778 - +0.5 5,902,778 - +0.0 5,902,778 - -0.5 5,902,778 - +0.8 5,902,778 - +0.4 5,902,778 - -2.3 5,902,778 - +0.7 5,902,778 - -0.3 5,902,778 - +0.4 5,902,778 - -0.9 5,902,778 - -0.7 5,902,826 + +0.2 5,902,826 + -0.6 5,902,868 + +0.1 5,902,868 + -0.9 5,902,868 + +0.5 5,902,882 + +0.0 5,902,882 + -0.3 5,902,986 + -0.3 5,903,023 + -1.7 5,903,024 - +0.3 5,903,062 + +0.8 5,903,063 - -2.2 5,903,063 - -0.3 5,903,063 - +0.0 5,903,103 + +0.2 5,903,104 - +0.9 5,903,104 - -0.6 5,903,107 + +0.4 5,903,107 + -1.0 5,903,108 - +1.8 5,903,142 - +1.1 5,903,183 + +1.4 5,903,261 + -0.6 5,903,262 - -1.5 5,903,266 - -0.6 5,903,456 - Psyr_4977 0.21 +2.2 5,903,460 + Psyr_4977 0.21 +0.8 5,903,460 + Psyr_4977 0.21 -1.0 5,903,460 + Psyr_4977 0.21 -0.4 5,903,460 + Psyr_4977 0.21 -0.3 5,903,460 + Psyr_4977 0.21 -1.4 5,903,461 - Psyr_4977 0.21 +0.8 5,903,525 + Psyr_4977 0.27 +0.1 5,903,525 + Psyr_4977 0.27 -0.9 5,903,525 + Psyr_4977 0.27 -0.6 5,903,526 - Psyr_4977 0.27 -1.3 5,903,654 - Psyr_4977 0.40 +0.6 5,903,654 - Psyr_4977 0.40 -0.0 5,903,654 - Psyr_4977 0.40 -0.6 5,903,654 - Psyr_4977 0.40 +0.3
Or see this region's nucleotide sequence